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View Structure Prediction Details

Protein: RPL3
Organism: Homo sapiens
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL3.

Description E-value Query
Range
Subject
Range
gi|60654345 - gi|60654345|gb|AAX29863.1| ribosomal protein L3 [synthetic construct]
0.0 [1..403] [1..403]
gi|74181618 - gi|74181618|dbj|BAE30074.1| unnamed protein product [Mus musculus]
0.0 [1..403] [1..403]
gi|57698 - gi|57698|emb|CAA44095.1| ribosomal protein L3 [Rattus rattus]
RL3_RAT - 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
0.0 [1..403] [1..403]
gi|14250148 - gi|14250148|gb|AAH08492.1| Ribosomal protein L3 [Homo sapiens]
0.0 [1..403] [1..403]

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Predicted Domain #1
Region A:
Residues: [1-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRKFSAPR HGSLGFLPRK RSSRHRGKVK SFPKDDPSKP VHLTAFLGYK AGMTHIVREV  60
   61 DRPGSKVNKK EVVEAVTIVE TPPMVVVGIV GYVETPRGLR TFKTVFAEHI SDECKRRFYK 120
  121 NWHKSKKKAF TKYCKKWQDE DGKKQLEKDF SSMKKYCQVI RVIAHTQMRL LPLRQKKAHL 180
  181 MEIQVNGGTV AEKLDWARER LEQQVPVNQV FGQDEMIDVI GVTKGKGYKG VTSRWHTKKL 240
  241 PRKTHRGLRK VACIGAWHPA RVAFSVARAG QKGYHHRTEI NKKIYKIGQG YLIKDGKLIK 300
  301 NNASTDYDLS DKSINPLGGF VHYGEVTNDF VMLKGCVVGT KKRVLTLRKS LLVQTKRRAL 360
  361 EKIDLKFIDT TSKFGHGRFQ TMEEKKAFMG PLKKDRIAKE EGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 137.0
Match: 1s1iC
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle