YRC Public Data Repository - Protein Structure Prediction

Protein:	CAMK2D
Organism:	Homo sapiens
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAMK2D.

Description	E-value	Query Range	Subject Range
gi\|77748404 - gi\|77748404\|gb\|AAI07563.1\| Camk2d protein [Rattus norvegicus]	0.0	[1..499]	[1..499]
CAMK2D - calcium/calmodulin-dependent protein kinase II delta	0.0	[1..499]	[1..499]
KCC2D_PIG - Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Sus scrofa GN=CAMK2D PE=2 SV=1 tr\|M3WNF0\|M3WNF0... - Calcium/calmodulin dependent protein kinase II delta OS=Felis catus GN=CAMK2D PE=3 SV=1	1.0E-99	[1..499]	[1..499]
gi\|3241849, gi\|1... - gi\|3241849\|dbj\|BAA28870.1\| calmodulin-dependent protein kinase II-delta dash [Oryctolagus cuniculus]...	1.0E-99	[1..499]	[1..499]
gi\|114595762 - gi\|114595762\|ref\|XP_001146252.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	2.0E-93	[1..476]	[1..476]
gi\|12849628, gi\|... - gi\|18158420\|ref\|NP_076302.1\| calcium/calmodulin-dependent protein kinase II, delta isoform 3 [Mus mu... gi\|146231868 - gi\|146231868\|gb\|ABQ13009.1\| calcium/calmodulin-dependent protein kinase II delta [Bos taurus] gi\|26667189, gi\|... - gi\|26667189\|ref\|NP_742126.1\| calcium/calmodulin-dependent protein kinase II delta isoform 2 [Homo sa... gi\|109075450 - gi\|109075450\|ref\|XP_001096678.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I... gi\|114595764 - gi\|114595764\|ref\|XP_001146325.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	6.0E-93	[1..476]	[1..476]
KCC2D_CHICK - Calcium/calmodulin-dependent protein kinase type II delta chain OS=Gallus gallus GN=CAMK2D PE=2 SV=1	2.0E-92	[1..476]	[1..476]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 120
  121 LESVNHCHLN GIVHRDLKPE NLLLASKSKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 180
  181 LSPEVLRKDP YGKPVDMWAC GVILYILLVG YPPFWDEDQH RLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKDLIN KMLTINPAKR ITASEALKHP WICQRSTVAS MMHRQETVDC LKKFNARRKL 300
  301 KGAILTTMLA TRNFSAAKSL LKKPDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [327-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKESTESSNT TIEDEDVKAR KQEIIKVTEQ LIEAINNGDF EAYTKICDPG LTAFEPEALG  60
   61 NLVEGMDFHR FYFENALSKS NKPIHTIILN PHVHLVGDDA ACIAYIRLTQ YMDGSGMPKT 120
  121 MQSEETRVWH RRDGKWQNVH FHRSGSPTVP IKPPCIPNGK ENFSGGTSLW QNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits