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View Structure Prediction Details

Protein: RPL38
Organism: Homo sapiens
Length: 70 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL38.

Description E-value Query
Range
Subject
Range
gi|76646012 - gi|76646012|ref|XP_872162.1| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]
157.0 [0..1] [70..410]
gi|50808293 - gi|50808293|ref|XP_428957.1| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...
138.0 [0..2] [62..42]
gi|109117614 - gi|109117614|ref|XP_001089804.1| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]
123.0 [0..2] [70..129]
gi|115313002 - gi|115313002|gb|AAI24070.1| Zgc:152655 protein [Danio rerio]
123.0 [0..15] [70..187]
gi|111307831 - gi|111307831|gb|AAI21347.1| LOC548667 protein [Xenopus tropicalis]
111.0 [0..17] [70..366]
gi|50931949, gi|... - gi|50931949|ref|XP_475502.1| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...
110.0 [0..1] [69..1]
gi|116060536 - gi|116060536|emb|CAL55872.1| 60S ribosomal protein L38 (ISS) [Ostreococcus tauri]
109.0 [0..2] [69..24]
RL38_ARATH - 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1
109.0 [0..1] [69..1]
RL38_TIMBA - 60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1
107.0 [0..1] [70..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKIEEIKD FLLTARRKDA KSVKIKKNKD NVKFKVRCSR YLYTLVITDK EKAEKLKQSL  60
   61 PPGLAVKELK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 50.136677
Match: PF01781.9
Description: No description for PF01781.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle