YRC Public Data Repository - Protein Structure Prediction

Protein:	ZUPT_ECOLI
Organism:	Escherichia coli
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZUPT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|32397573, gi\|... - gi\|32472201\|ref\|NP_865195.1\| gufA protein [Rhodopirellula baltica SH 1], gi\|32397573\|emb\|CAD72879.1\|...	160.0	[0..1]	[252..100]
gi\|109088324 - gi\|109088324\|ref\|XP_001092018.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), ...	153.0	[0..6]	[242..372]
gi\|114629644 - gi\|114629644\|ref\|XP_001153510.1\| PREDICTED: solute carrier family 39 (zinc transporter), member 12 i...	151.0	[0..6]	[242..372]
gi\|55664300, gi\|... - gi\|55960462\|emb\|CAI15903.1\| solute carrier family 39 (zinc transporter), member 12 [Homo sapiens], g...	151.0	[0..6]	[242..372]
gi\|157103809, gi... - gi\|157103809\|ref\|XP_001648141.1\| zinc transporter [Aedes aegypti], gi\|108869342\|gb\|EAT33567.1\| zinc ...	150.0	[0..2]	[254..338]
S39AC_MACFA - Zinc transporter ZIP12 OS=Macaca fascicularis GN=SLC39A12 PE=2 SV=1	150.0	[0..6]	[242..372]
S39AC_BOVIN - Zinc transporter ZIP12 OS=Bos taurus GN=SLC39A12 PE=2 SV=1	150.0	[0..6]	[251..372]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPLILTIL AGAATFIGAF LGVLGQKPSN RLLAFSLGFA AGIMLLISLM EMLPAALAAE  60
   61 GMSPVLGYGM FIFGLLGYFG LDRMLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAHPQDLMQK SVQPLPKSIK RTAILLTLGI SLHNFPEGIA TFVTASSNLE LGFGIALAVA  60
   61 LHNIPEGLAV AGPVYAATGS KRTAILWAGI SGLAEILGGV LAWLILGSMI SPVVMAAIMA 120
  121 AVAGIMVALS VDELMPLAKE IDPNNNPSYG VLCGMSVMGF SLVLLQTAGI G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits