YRC Public Data Repository - Protein Structure Prediction

Protein:	YTFQ_ECOLI
Organism:	Escherichia coli
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTFQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	296.0	[0..6]	[307..44]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	294.0	[0..1]	[307..39]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	288.0	[0..6]	[307..44]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	282.0	[0..1]	[307..38]
PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus GN=purR PE=3 SV=1 PURR_VIBVY - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain YJ016) GN=purR PE=3 SV=1 PURR_VIBVU - HTH-type transcriptional repressor PurR OS=Vibrio vulnificus (strain CMCP6) GN=purR PE=3 SV=1	280.0	[0..1]	[308..37]
RBSR_PASMU - Ribose operon repressor OS=Pasteurella multocida GN=rbsR PE=3 SV=1 RBSR_PASMU - Ribose operon repressor OS=Pasteurella multocida (strain Pm70) GN=rbsR PE=3 SV=1	279.0	[0..1]	[315..37]
gi\|90410173, gi\|... - gi\|90410173\|ref\|ZP_01218190.1\| Putative ribose operon repressor, rbsR [Photobacterium profundum 3TCK...	278.0	[0..3]	[308..39]
gi\|37200774, gi\|... - gi\|37676233\|ref\|NP_936629.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200774\|dbj\|BA...	278.0	[0..3]	[306..39]
gi\|254228983, gi... - gi\|75854636\|ref\|ZP_00762318.1\| COG1609: Transcriptional regulators [Vibrio sp. Ex25], gi\|254228983\|r...	277.0	[0..1]	[308..37]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKRLLIVSA VSAAMSSMAL AAPLTVGFSQ VGSESGWRAA ETNVAKSEAE KRGITLKIAD  60
   61 GQQKQENQIK AVRSFVAQGV DAIFIAPVVA TGWEPVLKEA KDAEIPVFLL DRSIDVKDKS 120
  121 LYMTTVTADN ILEGKLIGDW LVKEVNGKPC NVVELQGTVG ASVAIDRKKG FAEAIKNAPN 180
  181 IKIIRSQSGD FTRSKGKEVM ESFIKAENNG KNICMVYAHN DDMVIGAIQA IKEAGLKPGK 240
  241 DILTGSIDGV PDIYKAMMDG EANASVELTP NMAGPAFDAL EKYKKDGTMP EKLTLTKSTL 300
  301 YLPDTAKEEL EKKKNMGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2ioyA
Description:	No description for 2ioyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits