YRC Public Data Repository - Protein Structure Prediction

Protein:	YTFP_ECOLI
Organism:	Escherichia coli
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTFP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81247938, gi\|... - gi\|82546527\|ref\|YP_410474.1\| hypothetical protein SBO_4221 [Shigella boydii Sb227], gi\|81247938\|gb\|A... gi\|187732144, gi... - gi\|75179326\|ref\|ZP_00699330.1\| COG2105: Uncharacterized conserved protein [Shigella boydii BS512], g...	142.0	[0..1]	[113..1]
gi\|58177343 - gi\|58177343\|pdb\|1XHS\|A Chain A, Solution Nmr Structure Of Protein Ytfp From Escherichia Coli. Northe...	141.0	[0..1]	[113..1]
gi\|205332954, gi... - gi\|205332954\|gb\|EDZ19718.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910568 - gi\|238910568\|ref\|ZP_04654405.1\| hypothetical protein SentesTe_05448 [Salmonella enterica subsp. ente... gi\|168234552, gi... - gi\|197291893\|gb\|EDY31243.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336996, gi... - gi\|205336996\|gb\|EDZ23760.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168262559, gi... - gi\|205348672\|gb\|EDZ35303.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323873, gi... - gi\|205323873\|gb\|EDZ11712.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167991187, gi... - gi\|205330262\|gb\|EDZ17026.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16422973, gi\|... - gi\|16767657\|ref\|NP_463272.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16422973\|... gi\|205274949, gi... - gi\|205355168\|ref\|YP_002228969.1\| hypothetical protein SG4256 [Salmonella enterica subsp. enterica se... gi\|16505539, gi\|... - gi\|25351292\|pir\|\|AF1055 conserved hypothetical protein ytfP [imported] - Salmonella enterica subsp. ... gi\|207859558, gi... - gi\|207859558\|ref\|YP_002246209.1\| hypothetical protein SEN4180 [Salmonella enterica subsp. enterica s... gi\|16763231 - gi\|16763231\|ref\|NP_458848.1\| hypothetical protein STY4770 [Salmonella enterica subsp. enterica serov... gi\|213022123 - gi\|213022123\|ref\|ZP_03336570.1\| hypothetical protein Salmonelentericaenterica_05382 [Salmonella ente... gi\|29140349, gi\|... - gi\|29144710\|ref\|NP_808052.1\| hypothetical protein t4465 [Salmonella enterica subsp. enterica serovar... gi\|213422399 - gi\|213422399\|ref\|ZP_03355465.1\| hypothetical protein Salmonentericaenterica_33550 [Salmonella enteri... gi\|197096604, gi... - gi\|197365127\|ref\|YP_002144764.1\| hypothetical protein SSPA3930 [Salmonella enterica subsp. enterica ... gi\|198246221, gi... - gi\|198246221\|ref\|YP_002218294.1\| hypothetical protein SeD_A4810 [Salmonella enterica subsp. enterica... gi\|199604310, gi... - gi\|200387212\|ref\|ZP_03213824.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204323609, gi... - gi\|204926944\|ref\|ZP_03218146.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194471037, gi... - gi\|194471037\|ref\|ZP_03077021.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194737100, gi... - gi\|194737100\|ref\|YP_002117351.1\| hypothetical protein SeSA_A4680 [Salmonella enterica subsp. enteric... gi\|197248983, gi... - gi\|197248983\|ref\|YP_002149326.1\| hypothetical protein SeAg_B4691 [Salmonella enterica subsp. enteric... gi\|197261790, gi... - gi\|197261790\|ref\|ZP_03161864.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195632619, gi... - gi\|195632619\|gb\|EDX51073.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168821175, gi... - gi\|205342256\|gb\|EDZ29020.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194402075, gi... - gi\|194443412\|ref\|YP_002043668.1\| hypothetical protein SNSL254_A4776 [Salmonella enterica subsp. ente... gi\|194449694, gi... - gi\|194449694\|ref\|YP_002048454.1\| hypothetical protein SeHA_C4831 [Salmonella enterica subsp. enteric... gi\|214002807 - gi\|214002807\|ref\|ZP_03413542.1\| hypothetical protein Salmonellentericaenterica_21821 [Salmonella ent... gi\|213428286 - gi\|213428286\|ref\|ZP_03361036.1\| hypothetical protein SentesTyphi_23635 [Salmonella enterica subsp. e... gi\|213622634 - gi\|213622634\|ref\|ZP_03375417.1\| hypothetical protein SentesTyp_36046 [Salmonella enterica subsp. ent... gi\|213649717 - gi\|213649717\|ref\|ZP_03379770.1\| hypothetical protein SentesTy_21965 [Salmonella enterica subsp. ente... gi\|213855329 - gi\|213855329\|ref\|ZP_03383569.1\| hypothetical protein SentesT_15192 [Salmonella enterica subsp. enter... gi\|62182856, gi\|... - gi\|62182856\|ref\|YP_219273.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|56130461, gi\|... - gi\|56416204\|ref\|YP_153279.1\| hypothetical protein SPA4231 [Salmonella enterica subsp. enterica serov...	137.0	[0..1]	[113..1]
gi\|238787567, gi... - gi\|77973991\|ref\|ZP_00829534.1\| COG2105: Uncharacterized conserved protein [Yersinia frederiksenii AT...	133.0	[0..1]	[113..1]
gi\|75854567, gi\|... - gi\|75854567\|ref\|ZP_00762253.1\| COG2105: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	132.0	[0..3]	[110..5]
gi\|50122515, gi\|... - gi\|50122515\|ref\|YP_051682.1\| hypothetical protein ECA3594 [Pectobacterium atrosepticum SCRI1043], gi...	132.0	[0..1]	[113..1]
gi\|77961843 - gi\|77961843\|ref\|ZP_00825672.1\| COG2105: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	131.0	[0..1]	[113..1]
gi\|86147595, gi\|... - gi\|86147595\|ref\|ZP_01065905.1\| hypothetical protein MED222_22938 [Vibrio sp. MED222], gi\|85834634\|gb...	131.0	[0..3]	[112..5]
gi\|165937494, gi... - gi\|89104091\|ref\|ZP_01176645.1\| COG2105: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|77634764, gi\|... - gi\|77634764\|ref\|ZP_00796858.1\| COG2105: Uncharacterized conserved protein [Yersinia pestis Angola], ... gi\|108806070, gi... - gi\|108806070\|ref\|YP_649986.1\| hypothetical protein YPA_0072 [Yersinia pestis Antiqua], gi\|108777983\|... gi\|153950488, gi... - gi\|77631452\|ref\|ZP_00794038.1\| COG2105: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|229679672, gi... - gi\|229903902\|ref\|ZP_04519015.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679672\|gb\|EEO757... gi\|229695542, gi... - gi\|229839176\|ref\|ZP_04459335.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229700443, gi... - gi\|229896665\|ref\|ZP_04511832.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700443\|gb\|EEO... gi\|229687232, gi... - gi\|229899740\|ref\|ZP_04514881.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Q66F86\|Q66F86_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|165989764, gi... - gi\|166011380\|ref\|ZP_02232278.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165919860, gi... - gi\|165928173\|ref\|ZP_02224005.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049324, gi... - gi\|167401299\|ref\|ZP_02306799.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204786, gi... - gi\|166213991\|ref\|ZP_02240026.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|22124576, gi\|... - gi\|22124576\|ref\|NP_667999.1\| hypothetical protein y0662 [Yersinia pestis KIM], gi\|21957377\|gb\|AAM842... gi\|167423376, gi... - gi\|167423376\|ref\|ZP_02315129.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25351290 - pir\|\|AC0428 conserved hypothetical protein YPO3522 [imported] - Yersinia pestis (strain CO92) gi\|167420796, gi... - gi\|167420796\|ref\|ZP_02312549.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51594806, gi\|... - gi\|51594806\|ref\|YP_068997.1\| hypothetical protein YPTB0454 [Yersinia pseudotuberculosis IP 32953], g... gi\|45435272, gi\|... - gi\|45440415\|ref\|NP_991954.1\| hypothetical protein YP_0561 [Yersinia pestis biovar Microtus str. 9100... gi\|115349147, gi... - gi\|218930536\|ref\|YP_002348411.1\| hypothetical protein YPO3522 [Yersinia pestis CO92], gi\|16123668\|re... gi\|153997299, gi... - gi\|153997299\|ref\|ZP_02022399.1\| hypothetical protein YPE_3743 [Yersinia pestis CA88-4125], gi\|149288... gi\|145600818, gi... - gi\|145600818\|ref\|YP_001164894.1\| hypothetical protein YPDSF_3571 [Yersinia pestis Pestoides F], gi\|1... gi\|170025983, gi... - gi\|170025983\|ref\|YP_001722488.1\| AIG2 family protein [Yersinia pseudotuberculosis YPIII], gi\|1697525... gi\|167469958 - gi\|167469958\|ref\|ZP_02334662.1\| hypothetical protein YpesF_19204 [Yersinia pestis FV-1] gi\|186893815, gi... - gi\|186893815\|ref\|YP_001870927.1\| AIG2 family protein [Yersinia pseudotuberculosis PB1/+], gi\|1866968...	131.0	[0..1]	[113..1]
gi\|77958765 - gi\|77958765\|ref\|ZP_00822793.1\| COG2105: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	130.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFVYGSLR HKQGNSHWMT NAQLLGDFSI DNYQLYSLGH YPGAVPGNGT VHGEVYRIDN  60
   61 ATLAELDALR TRGGEYARQL IQTPYGSAWM YVYQRPVDGL KLIESGDWLD RDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1xhsA
Description:	Solution structure of the hypothetical protein ytfP from Escherichia coli. Northeast Structural Genomics target ER111.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits