YRC Public Data Repository - Protein Structure Prediction

Protein:	RCMNS_ECOLI, YTF...
Organism:	Escherichia coli
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCMNS_ECOLI, YTF....

Description	E-value	Query Range	Subject Range
YTFE_YERPS - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype I (strain IP32953) G... YTFE_YERPY - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) G... YTFE_YERPS, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis GN=ytfE PE=3 SV=1, Regulator ... YTFE_YERP3 - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 3175...	210.0	[0..1]	[220..1]
YTFE_YERPE - Iron-sulfur cluster repair protein YtfE OS=Yersinia pestis GN=ytfE PE=3 SV=1 gi\|45435263, gi\|... - gi\|45440406\|ref\|NP_991945.1\| cell morphogenesis/cell wall metabolism regulator [Yersinia pestis biov... gi\|22124566, gi\|... - gi\|22124566\|ref\|NP_667989.1\| cell morphogenesis/cell wall metabolism regulator [Yersinia pestis KIM]... gi\|115349156, gi... - gi\|218930545\|ref\|YP_002348420.1\| iron-sulfur cluster repair di-iron protein [Yersinia pestis CO92], ... gi\|167420741, gi... - gi\|167420741\|ref\|ZP_02312494.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|167401218, gi... - gi\|167401218\|ref\|ZP_02306718.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|167423415, gi... - gi\|167423415\|ref\|ZP_02315168.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|149288945, gi... - gi\|153997308\|ref\|ZP_02022408.1\| hypothetical protein YPE_3752 [Yersinia pestis CA88-4125], gi\|149288... YTFE_YERPP - Iron-sulfur cluster repair protein YtfE OS=Yersinia pestis (strain Pestoides F) GN=ytfE PE=3 SV=1 YTFE_YERPG - Iron-sulfur cluster repair protein YtfE OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ytfE PE=3 ... gi\|165937497, gi... - gi\|89102322\|ref\|ZP_01174964.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Yersinia p... YTFE_YERPA - Iron-sulfur cluster repair protein YtfE OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ytfE PE=3... YTFE_YERPN - Iron-sulfur cluster repair protein YtfE OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ytfE PE=... gi\|165919838, gi... - gi\|165928151\|ref\|ZP_02223983.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|166213969, gi... - gi\|166213969\|ref\|ZP_02240004.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|165989671, gi... - gi\|166011287\|ref\|ZP_02232185.1\| hemerythrin HHE cation binding domain protein [Yersinia pestis biova... gi\|229839185, gi... - gi\|229839185\|ref\|ZP_04459344.1\| iron metabolism protein [Yersinia pestis biovar Orientalis str. PEXU... gi\|229700452, gi... - gi\|229896674\|ref\|ZP_04511841.1\| iron metabolism protein [Yersinia pestis Pestoides A], gi\|229700452\|... gi\|229687241, gi... - gi\|229899749\|ref\|ZP_04514890.1\| iron metabolism protein [Yersinia pestis biovar Orientalis str. Indi...	209.0	[0..1]	[220..1]
gi\|238792985, gi... - gi\|77977615\|ref\|ZP_00833059.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Yersinia i...	206.0	[0..1]	[220..1]
YTFE_SHIBS - Iron-sulfur cluster repair protein YtfE OS=Shigella boydii serotype 4 (strain Sb227) GN=ytfE PE=3 SV...	205.0	[0..1]	[220..1]
YTFE_ECOL6 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... YTFE_ECOUT - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain UTI89 / UPEC) GN=ytfE PE=3 SV=1 YTFE_ESCF3 - Iron-sulfur cluster repair protein YtfE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / C... YTFE_ECO7I - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ytfE PE=... gi\|227886738, gi... - gi\|227886738\|ref\|ZP_04004543.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli ... YTFE_ECOK1 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O1:K1 / APEC GN=ytfE PE=3 SV=1 gi\|237703886, gi... - gi\|237703886\|ref\|ZP_04534367.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia sp. 3... YTFE_ECOSM - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ytfE PE=3 SV... sp\|B7UQM4\|YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... gi\|170766934, gi... - gi\|170766934\|ref\|ZP_02901387.1\| regulator of cell morphogenesis and NO signaling [Escherichia albert... YTFE_ECOL6, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6 GN=ytfE PE=3 SV=1, Regulator of cell ...	205.0	[0..1]	[220..1]
gi\|238787559, gi... - gi\|77973982\|ref\|ZP_00829525.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Yersinia f...	205.0	[0..1]	[220..1]
YTFE_ECOL5 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ytfE P... YTFE_ECOLU - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=y... gi\|75242397, gi\|... - gi\|75242397\|ref\|ZP_00726159.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi...	203.0	[0..1]	[220..1]
gi\|77961285, gi\|... - gi\|77961285\|ref\|ZP_00825126.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Yersinia m...	203.0	[0..1]	[220..1]
gi\|110592439, gi... - gi\|121595469\|ref\|YP_987365.1\| hypothetical protein Ajs_3164 [Acidovorax sp. JS42], gi\|120607549\|gb\|A...	203.0	[0..6]	[218..13]
gi\|238715607, gi... - gi\|77958756\|ref\|ZP_00822784.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Yersinia b...	203.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRDQPLGE LALSIPRASA LFRKYDMDYC CGGKQTLARA AARKELDVEV IEAELAKLAE  60
   61 QPIEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.05
Match:	2fi0A
Description:	The crystal structure of the conserved domain protein from Streptococcus pneumoniae TIGR4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [66-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWRSAPLAEI IDHIIVRYHD RHREQLPELI LQATKVERVH ADKPSVPKGL TKYLTMLHEE  60
   61 LSSHMMKEEQ ILFPMIKQGM GSQAMGPISV MESEHDEAGE LLEVIKHTTN NVTPPPEACT 120
  121 TWKAMYNGIN ELIDDLMDHI SLENNVLFPR ALAGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2p0nA
Description:	No description for 2p0nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits