YRC Public Data Repository - Protein Structure Prediction

Protein:	YRFA_ECOLI
Organism:	Escherichia coli
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74313897, gi\|... - gi\|74313897\|ref\|YP_312316.1\| hypothetical protein SSON_3523 [Shigella sonnei Ss046], gi\|73857374\|gb\|...	260.0	[0..1]	[134..14]
gi\|82778794, gi\|... - gi\|82778794\|ref\|YP_405143.1\| hypothetical protein SDY_3687 [Shigella dysenteriae Sd197], gi\|81242942... gi\|82545747, gi\|... - gi\|82545747\|ref\|YP_409694.1\| hypothetical protein SBO_3379 [Shigella boydii Sb227], gi\|81247158\|gb\|A... gi\|606326\|gb\|AAA... - ORF_f147; gtg start [Escherichia coli] gi\|7465922, gi\|6... - gi\|7465922\|pir\|\|C65134 hypothetical 16.9K protein b3392 - Escherichia coli (strain K-12), gi\|606326\|... gi\|49176345, gi\|... - gi\|49176345\|ref\|NP_417851.3\| hypothetical protein b3392 [Escherichia coli K12], gb\|AAC76417.1\| orf, ...	259.0	[0..1]	[134..14]
gi\|26249986, gi\|... - gi\|26249986\|ref\|NP_756026.1\| hypothetical protein c4162 [Escherichia coli CFT073], gi\|26110415\|gb\|AA...	259.0	[0..1]	[134..14]
gi\|251786645, gi... - gi\|251786645\|ref\|YP_003000949.1\| hypothetical protein B21_03196 [Escherichia coli BL21], gi\|24237891... gi\|254163320, gi... - gi\|254163320\|ref\|YP_003046428.1\| hypothetical protein ECB_03244 [Escherichia coli B str. REL606], gi... gi\|254290070, gi... - gi\|254290070\|ref\|YP_003055818.1\| hypothetical protein ECD_03244 [Escherichia coli BL21(DE3)], gi\|253... gi\|218555937, gi... - gi\|218555937\|ref\|YP_002388850.1\| hypothetical protein ECIAI1_3530 [Escherichia coli IAI1], gi\|218362... gi\|194425122, gi... - gi\|83588743\|ref\|ZP_00927367.1\| hypothetical protein Ecol1_01000376 [Escherichia coli 101-1], gi\|1944...	258.0	[0..1]	[134..1]
gi\|75260319, gi\|... - gi\|75260319\|ref\|ZP_00731587.1\| hypothetical protein EcolE2_01000207 [Escherichia coli E22], gi\|19306...	258.0	[0..1]	[134..1]
gi\|25339814, gi\|... - pir\|\|H86003 hypothetical protein yrfA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518015, gi\|... - gi\|15803895\|ref\|NP_289931.1\| hypothetical protein Z4746 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|13363708 - gi\|13363708\|dbj\|BAB37657.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13363708 - gi\|13363708\|dbj\|BAB37657.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	257.0	[0..1]	[134..14]
gi\|190908216, gi... - gi\|75241518\|ref\|ZP_00725363.1\| hypothetical protein EcolF_01001524 [Escherichia coli F11], gi\|191171... gi\|110643625, gi... - gi\|110643625\|ref\|YP_671355.1\| hypothetical protein ECP_3478 [Escherichia coli 536], gi\|110345217\|gb\|... gi\|218429232, gi... - gi\|218691668\|ref\|YP_002399880.1\| hypothetical protein ECED1_4050 [Escherichia coli ED1a], gi\|2184292... gi\|218367218, gi... - gi\|218560449\|ref\|YP_002393362.1\| hypothetical protein ECS88_3777 [Escherichia coli S88], gi\|21836721...	256.0	[0..1]	[134..1]
gi\|237703119, gi... - gi\|237703119\|ref\|ZP_04533600.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91074438, gi\|... - gi\|91212864\|ref\|YP_542850.1\| hypothetical protein UTI89_C3890 [Escherichia coli UTI89], gi\|91074438\|...	256.0	[0..1]	[134..14]
gi\|124500872, gi... - gi\|124528217\|ref\|ZP_01699550.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500872\|gb... gi\|75197323 - gi\|75197323\|ref\|ZP_00707393.1\| hypothetical protein EcolH_01003139 [Escherichia coli HS] gi\|170018372, gi... - gi\|170018372\|ref\|YP_001723326.1\| hypothetical protein EcolC_0321 [Escherichia coli ATCC 8739], gi\|16...	256.0	[0..1]	[134..1]
gi\|189364559, gi... - gi\|189364559\|gb\|EDU82978.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189369520, gi... - gi\|189369520\|gb\|EDU87936.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189359074, gi... - gi\|189359074\|gb\|EDU77493.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|38704164 - gi\|38704164\|ref\|NP_312261.2\| hypothetical protein ECs4234 [Escherichia coli O157:H7 str. Sakai] gi\|168747134, gi... - gi\|188018412\|gb\|EDU56534.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|38704164 - gi\|38704164\|ref\|NP_312261.2\| hypothetical protein ECs4234 [Escherichia coli O157:H7] gi\|217320500, gi... - gi\|217324279\|ref\|ZP_03440363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|254594706, gi... - gi\|254795306\|ref\|YP_003080143.1\| hypothetical protein ECSP_4341 [Escherichia coli O157:H7 str. TW143... gi\|209396224, gi... - gi\|209396224\|ref\|YP_002272826.1\| hypothetical protein ECH74115_4696 [Escherichia coli O157:H7 str. E... gi\|208819069, gi... - gi\|208819069\|ref\|ZP_03259389.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208812371, gi... - gi\|208812371\|ref\|ZP_03253700.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208726251, gi... - gi\|208806450\|ref\|ZP_03248787.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195934880 - gi\|195934880\|ref\|ZP_03080262.1\| hypothetical protein EscherichcoliO157_00220 [Escherichia coli O157:... gi\|189380100, gi... - gi\|189380100\|gb\|EDU98516.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168779472, gi... - gi\|189002246\|gb\|EDU71232.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772720, gi... - gi\|187771669\|gb\|EDU35513.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g...	256.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKRWLLAG IALCLLTGMR DPFKPPEDLC RISELSQWRY QGMVGRGERI IGVIKDGQKK  60
   61 WRRVQQNDVL ENGWTILQLT PDVLTLGTGT NCEPPQWLWQ RQGDTNEAMD SRTTVDADTR 120
  121 RTGGKAAKSD ADGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits