YRC Public Data Repository - Protein Structure Prediction

Protein:	YRAN_ECOLI
Organism:	Escherichia coli
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRAN_ECOLI.

Description	E-value	Query Range	Subject Range
YRAN_SHISS - UPF0102 protein YraN OS=Shigella sonnei (strain Ss046) GN=yraN PE=3 SV=1 YRAN_ECO7I - UPF0102 protein YraN OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yraN PE=3 SV=1 YRAN_ECOSM - UPF0102 protein YraN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
gi\|75260078, gi\|... - gi\|75260078\|ref\|ZP_00731356.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... YRAN_SHIDS - UPF0102 protein YraN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yraN PE=3 SV=1 YRAN_ECO55 - UPF0102 protein YraN OS=Escherichia coli (strain 55989 / EAEC) GN=yraN PE=3 SV=1 YRAN_ECOSE - UPF0102 protein YraN OS=Escherichia coli (strain SE11) GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
gi\|24114439, gi\|... - gi\|24114439\|ref\|NP_708949.1\| hypothetical protein SF3189 [Shigella flexneri 2a str. 301], gi\|2405361... gi\|30064488, gi\|... - gi\|30064488\|ref\|NP_838659.1\| hypothetical protein S3406 [Shigella flexneri 2a str. 2457T], gi\|300427... YRAN_SHIF8 - UPF0102 protein YraN OS=Shigella flexneri serotype 5b (strain 8401) GN=yraN PE=3 SV=1 YRAN_SHIFL - UPF0102 protein YraN OS=Shigella flexneri GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
YRAN_ECO24 - UPF0102 protein YraN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
gi\|226899139, gi... - gi\|237706099\|ref\|ZP_04536580.1\| yraN [Escherichia sp. 3_2_53FAA], gi\|226899139\|gb\|EEH85398.1\| yraN [... gi\|227835268, gi... - gi\|227887872\|ref\|ZP_04005677.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783526... YRAN_ECOK1 - UPF0102 protein YraN OS=Escherichia coli O1:K1 / APEC GN=yraN PE=3 SV=1 YRAN_ECO45 - UPF0102 protein YraN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yraN PE=3 SV=1 YRAN_ECOL6 - UPF0102 protein yraN OS=Escherichia coli O6 GN=yraN PE=3 SV=1 YRAN_ECOL6 - UPF0102 protein YraN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yraN PE=3 SV=... YRAN_ECOUT - UPF0102 protein YraN OS=Escherichia coli (strain UTI89 / UPEC) GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
gi\|193067389, gi... - gi\|75239297\|ref\|ZP_00723268.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida...	178.0	[0..1]	[131..1]
YRAN_SHIB3 - UPF0102 protein YraN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yraN PE=3 SV=1 YRAN_SHIBS - UPF0102 protein YraN OS=Shigella boydii serotype 4 (strain Sb227) GN=yraN PE=3 SV=1	178.0	[0..1]	[131..1]
gi\|189373926, gi... - gi\|189373926\|gb\|EDU92342.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379607, gi... - gi\|189379607\|gb\|EDU98023.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|195938368 - gi\|195938368\|ref\|ZP_03083750.1\| hypothetical protein EscherichcoliO157_18366 [Escherichia coli O157:... gi\|208727917, gi... - gi\|208808116\|ref\|ZP_03250453.1\| conserved hypothetical protein TIGR00252 [Escherichia coli O157:H7 s... gi\|12517753, gi\|... - gi\|15803690\|ref\|NP_289724.1\| hypothetical protein Z4507 [Escherichia coli O157:H7 EDL933], gi\|125177... gi\|168762112, gi... - gi\|189367592\|gb\|EDU86008.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|209758538, gi... - pir\|\|H85977 hypothetical protein yraN [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189361475, gi... - gi\|189361475\|gb\|EDU79894.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187770956, gi... - gi\|187770956\|gb\|EDU34800.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168781290, gi... - gi\|189001032\|gb\|EDU70018.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|188016421, gi... - gi\|188016421\|gb\|EDU54543.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168754127, gi... - gi\|189358590\|gb\|EDU77009.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|15833283, gi\|... - gi\|15833283\|ref\|NP_312056.1\| hypothetical protein ECs4029 [Escherichia coli O157:H7 str. Sakai], gi\|... YRAN_ECO57 - UPF0102 protein YraN OS=Escherichia coli O157:H7 GN=yraN PE=3 SV=1 gi\|208814096, gi... - gi\|208814096\|ref\|ZP_03255425.1\| conserved hypothetical protein TIGR00252 [Escherichia coli O157:H7 s... gi\|254795099, gi... - gi\|254795099\|ref\|YP_003079936.1\| hypothetical protein ECSP_4123 [Escherichia coli O157:H7 str. TW143... gi\|208819590, gi... - gi\|208819590\|ref\|ZP_03259910.1\| conserved hypothetical protein TIGR00252 [Escherichia coli O157:H7 s... YRAN_ECO5E - UPF0102 protein YraN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yraN PE=3 SV=1 gi\|217327786, gi... - gi\|217327786\|ref\|ZP_03443869.1\| conserved hypothetical protein TIGR00252 [Escherichia coli O157:H7 s...	177.0	[0..1]	[131..1]
gi\|75228794, gi\|... - gi\|75228794\|ref\|ZP_00715403.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida...	177.0	[0..1]	[131..1]
YRAN_ECO27 - UPF0102 protein YraN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yraN PE=3 SV=1 sp\|B7UJ44\|YRAN_ECO27 - UPF0102 protein yraN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yraN PE=3 SV=1 gi\|191172162, gi... - gi\|75240827\|ref\|ZP_00724725.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... YRAN_ECOL5 - UPF0102 protein YraN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yraN PE=3 SV=1	177.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVPTRSGS PRQLTTKQTG DAWEAQARRW LEGKGLRFIA ANVNERGGEI DLIMREGRTT  60
   61 IFVEVRYRRS ALYGGAAASV TRSKQHKLLQ TARLWLARHN GSFDTVDCRF DVVAFTGNEV 120
  121 EWIKDAFNDH S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.02
Match:	2eo0A
Description:	No description for 2eo0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits