YRC Public Data Repository - Protein Structure Prediction

Protein:	YRAM_ECOLI
Organism:	Escherichia coli
Length:	678 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRAM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26110155, gi\|... - gi\|26249727\|ref\|NP_755767.1\| hypothetical protein c3900 [Escherichia coli CFT073], gi\|26110155\|gb\|AA...	395.0	[0..1]	[678..43]
gi\|254289841, gi... - gi\|254289841\|ref\|YP_003055589.1\| hypothetical protein ECD_03014 [Escherichia coli BL21(DE3)], gi\|253... gi\|251786419, gi... - gi\|251786419\|ref\|YP_003000723.1\| hypothetical protein B21_02965 [Escherichia coli BL21], gi\|24237869... gi\|194422260, gi... - gi\|83585788\|ref\|ZP_00924429.1\| COG3107: Putative lipoprotein [Escherichia coli 101-1], gi\|194438788\|... gi\|253974992, gi... - gi\|254163091\|ref\|YP_003046199.1\| hypothetical protein ECB_03014 [Escherichia coli B str. REL606], gi...	387.0	[0..1]	[678..1]
gi\|110616564, gi... - gi\|110807016\|ref\|YP_690536.1\| putative glycosylase [Shigella flexneri 5 str. 8401], gi\|110616564\|gb\|...	386.0	[0..1]	[678..11]
LPOA_SHISS - Penicillin-binding protein activator LpoA OS=Shigella sonnei (strain Ss046) GN=lpoA PE=3 SV=1	386.0	[0..1]	[678..1]
gi\|75239296, gi\|... - gi\|75239296\|ref\|ZP_00723267.1\| COG3107: Putative lipoprotein [Escherichia coli E110019], gi\|19306743...	386.0	[0..1]	[678..1]
gi\|157162632, gi... - gi\|75197098\|ref\|ZP_00707168.1\| COG3107: Putative lipoprotein [Escherichia coli HS], gi\|157162632\|ref...	386.0	[0..1]	[678..1]
gi\|75240828, gi\|... - gi\|75240828\|ref\|ZP_00724726.1\| COG3107: Putative lipoprotein [Escherichia coli F11], gi\|191172164\|re... gi\|110344980, gi... - gi\|110643388\|ref\|YP_671118.1\| hypothetical protein ECP_3235 [Escherichia coli 536], gi\|110344980\|gb\|...	384.0	[0..1]	[678..1]
gi\|117625443, gi... - gi\|117625443\|ref\|YP_858766.1\| hypothetical protein APECO1_3283 [Escherichia coli APEC O1], gi\|115514... LPOA_ECOL6 - Penicillin-binding protein activator LpoA OS=Escherichia coli O6 GN=lpoA PE=3 SV=2 LPOA_ECOL6 - Penicillin-binding protein activator LpoA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|218366988, gi... - gi\|218560219\|ref\|YP_002393132.1\| hypothetical protein ECS88_3531 [Escherichia coli S88], gi\|21836698...	384.0	[0..1]	[678..1]
gi\|208811955, gi... - gi\|208811955\|ref\|ZP_03253284.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208819879, gi... - gi\|208819879\|ref\|ZP_03260199.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|209397195, gi... - gi\|209397195\|ref\|YP_002272618.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|217319564, gi... - gi\|217327197\|ref\|ZP_03443280.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|168786030, gi... - gi\|189373888\|gb\|EDU92304.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168786030... gi\|189379829, gi... - gi\|189379829\|gb\|EDU98245.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168797746... gi\|15833282, gi\|... - gi\|15833282\|ref\|NP_312055.1\| putative glycosylase [Escherichia coli O157:H7], gi\|13363501\|dbj\|BAB374... gi\|195938367 - gi\|195938367\|ref\|ZP_03083749.1\| putative glycosylase [Escherichia coli O157:H7 str. EC4024] gi\|25371761, gi\|... - pir\|\|D91132 probable glycosylase ECs4028 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208808857, gi... - gi\|208808857\|ref\|ZP_03251194.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|189367551, gi... - gi\|189367551\|gb\|EDU85967.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876211... gi\|15803689, gi\|... - gi\|15803689\|ref\|NP_289723.1\| putative glycosylase [Escherichia coli O157:H7 EDL933], gi\|12517752\|gb\|... gi\|189361471, gi... - gi\|189361471\|gb\|EDU79890.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876956... gi\|187770886, gi... - gi\|187770886\|gb\|EDU34730.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877318... gi\|189000967, gi... - gi\|189000967\|gb\|EDU69953.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878128... gi\|168749259, gi... - gi\|188016349\|gb\|EDU54471.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874925... gi\|15833282, gi\|... - gi\|15833282\|ref\|NP_312055.1\| putative glycosylase [Escherichia coli O157:H7 str. Sakai], gi\|13363501... gi\|189358509, gi... - gi\|189358509\|gb\|EDU76928.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875412... gi\|254795098, gi... - gi\|254795098\|ref\|YP_003079935.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	384.0	[0..1]	[678..1]
gi\|75228795, gi\|... - gi\|75228795\|ref\|ZP_00715404.1\| COG3107: Putative lipoprotein [Escherichia coli B7A], gi\|191168052\|re... gi\|209913883, gi... - gi\|209920624\|ref\|YP_002294708.1\| putative glycosylase [Escherichia coli SE11], gi\|209913883\|dbj\|BAG7...	383.0	[0..1]	[678..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSTFSRLK AARCLPVVLA ALIFAGCGTH TPDQSTAYMQ GTAQADSAFY LQQMQQSSDD  60
   61 TRINWQLLAI RALVKEGKTG QAVELFNQLP QELNDAQRRE KTLLAVEIKL AQKDFAGAQN 120
  121 LLAKITPADL EQNQQARYWQ AKIDASQGRP SIDLLRALIA QEPLLGAKEK QQNIDATWQA 180
  181 LSSMTQEQAN TLVINADENI LQGWLDLQRV WFDNRNDPDM MKAGIADWQK RYPNNPGAKM 240
  241 LPTQLVNVKA FKPASTNKIA LLLPLNGQAA VFGRTIQQGF EAAKNIGTQP VAAQVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.65
Match:	1xnfA
Description:	Crystal structure of E.coli TPR-protein NlpI
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [298-678]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAADVAEQP QPQTVDGVAS PAQASVSDLT GEQPAAQPVP VSAPATSTAA VSAPANPSAE  60
   61 LKIYDTSSQP LSQILSQVQQ DGASIVVGPL LKNNVEELLK SNTPLNVLAL NQPENIENRV 120
  121 NICYFALSPE DEARDAARHI RDQGKQAPLV LIPRSSLGDR VANAFAQEWQ KLGGGTVLQQ 180
  181 KFGSTSELRA GVNGGSGIAL TGSPITLRAT TDSGMTTNNP TLQTTPTDDQ FTNNGGRVDA 240
  241 VYIVATPGEI AFIKPMIAMR NGSQSGATLY ASSRSAQGTA GPDFRLEMEG LQYSEIPMLA 300
  301 GGNLPLMQQA LSAVNNDYSL ARMYAMGVDA WSLANHFSQM RQVQGFEING NTGSLTANPD 360
  361 CVINRNLSWL QYQQGQVVPV S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2h4aA
Description:	No description for 2h4aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits