YRC Public Data Repository - Protein Structure Prediction

Protein:	YQJA_ECOLI
Organism:	Escherichia coli
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQJA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67547666, gi\|... - gi\|67547666\|ref\|ZP_00425567.1\| DedA [Burkholderia vietnamiensis G4], gi\|67531101\|gb\|EAM27925.1\| DedA...	158.0	[0..1]	[213..753]
gi\|68202954, gi\|... - gi\|68229389\|ref\|ZP_00568584.1\| DedA [Frankia sp. EAN1pec], gi\|68202954\|gb\|EAN17131.1\| DedA [Frankia ...	158.0	[0..22]	[211..19]
gi\|29608316, gi\|... - gi\|29831202\|ref\|NP_825836.1\| hypothetical protein SAV_4659 [Streptomyces avermitilis MA-4680], gi\|29...	152.0	[0..23]	[213..16]
gi\|4808350, gi\|2... - gi\|4808350\|emb\|CAB42764.1\| possible membrane protein [Streptomyces coelicolor A3(2)], gi\|21221838\|re... gi\|7481018 - pir\|\|T36337 probable membrane protein - Streptomyces coelicolor	151.0	[0..23]	[213..16]
gi\|238791911, gi... - gi\|77976968\|ref\|ZP_00832431.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia interm...	151.0	[0..1]	[215..1]
gi\|37527058, gi\|... - gi\|37527058\|ref\|NP_930402.1\| hypothetical protein plu3172 [Photorhabdus luminescens subsp. laumondii...	148.0	[0..2]	[219..13]
gi\|238788687, gi... - gi\|77975510\|ref\|ZP_00831045.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia freder...	147.0	[0..1]	[215..1]
gi\|238718698, gi... - gi\|77960847\|ref\|ZP_00824702.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia mollar...	147.0	[0..1]	[215..1]
gi\|77957381, gi\|... - gi\|77957381\|ref\|ZP_00821439.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia bercov...	147.0	[0..1]	[215..1]
gi\|25299138 - pir\|\|AG0337 probable membrane protein dedA [imported] - Yersinia pestis (strain CO92) gi\|51590218, gi\|... - gi\|51596936\|ref\|YP_071127.1\| hypothetical protein YPTB2617 [Yersinia pseudotuberculosis IP 32953], g... gi\|45442186, gi\|... - gi\|45442186\|ref\|NP_993725.1\| hypothetical protein YP_2397 [Yersinia pestis biovar Microtus str. 9100... gi\|218929839, gi... - gi\|218929839\|ref\|YP_002347714.1\| hypothetical protein YPO2767 [Yersinia pestis CO92], gi\|16122971\|re... gi\|162353253, gi... - gi\|77635313\|ref\|ZP_00797399.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pestis... gi\|152959548, gi... - gi\|77629665\|ref\|ZP_00792251.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pseudo... Q668X0\|Q668X0_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|229688451, gi... - gi\|229898903\|ref\|ZP_04514048.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229701675, gi... - gi\|229895367\|ref\|ZP_04510540.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... gi\|145210968, gi... - gi\|145599272\|ref\|YP_001163348.1\| hypothetical protein YPDSF_1994 [Yersinia pestis Pestoides F], gi\|1... gi\|229838337, gi... - gi\|229838337\|ref\|ZP_04458496.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|89103385, gi\|... - gi\|89103385\|ref\|ZP_01175965.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pestis... gi\|149365241, gi... - gi\|149365241\|ref\|ZP_01887276.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291654\|... gi\|108779985, gi... - gi\|108808072\|ref\|YP_651988.1\| hypothetical protein YPA_2077 [Yersinia pestis Antiqua], gi\|108779985\|... gi\|229680144, gi... - gi\|229902697\|ref\|ZP_04517814.1\| conserved inner membrane protein [Yersinia pestis Nepal516], gi\|2296... gi\|167469281 - gi\|167469281\|ref\|ZP_02333985.1\| DedA protein [Yersinia pestis FV-1] gi\|169750305, gi... - gi\|170023771\|ref\|YP_001720276.1\| hypothetical protein YPK_1530 [Yersinia pseudotuberculosis YPIII], ... gi\|186699043, gi... - gi\|186896017\|ref\|YP_001873129.1\| hypothetical protein YPTS_2712 [Yersinia pseudotuberculosis PB1/+],... gi\|165923000, gi... - gi\|165925393\|ref\|ZP_02221225.1\| DedA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|165992457, gi... - gi\|166008075\|ref\|ZP_02228973.1\| DedA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|166214199, gi... - gi\|166214199\|ref\|ZP_02240234.1\| DedA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167051557, gi... - gi\|167399053\|ref\|ZP_02304577.1\| DedA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|167421269, gi... - gi\|167421269\|ref\|ZP_02313022.1\| DedA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|167424648, gi... - gi\|167424648\|ref\|ZP_02316401.1\| DedA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|...	145.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLTQLLQA LWAQDFETLA NPSMIGMLYF VLFVILFLEN GLLPAAFLPG DSLLVLVGVL  60
   61 IAKGAMGYPQ TILLLTVAAS LGCWVSYIQG RWLGNTRTVQ NWLSHLPAHY HQRAHHLFHK 120
  121 HGLSALLIGR FIAFVRTLLP TIAGLSGLNN ARFQFFNWMS GLLWVLILTT LGYMLGKTPV 180
  181 FLKYEDQLMS CLMLLPVVLL VFGLAGSLVV LWKKKYGNRG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.455932
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits