YRC Public Data Repository - Protein Structure Prediction

Protein:	YQEB_ECOLI
Organism:	Escherichia coli
Length:	541 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQEB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110643024, gi... - gi\|110643024\|ref\|YP_670754.1\| hypothetical protein ECP_2869 [Escherichia coli 536], gi\|110344616\|gb\|... gi\|91212253, gi\|... - gi\|91212253\|ref\|YP_542239.1\| hypothetical protein UTI89_C3260 [Escherichia coli UTI89], gi\|91073827\|... gi\|115514231, gi... - gi\|117625107\|ref\|YP_854095.1\| putative synthase [Escherichia coli APEC O1], gi\|115514231\|gb\|ABJ02306... gi\|190906485, gi... - gi\|75239220\|ref\|ZP_00723193.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ... gi\|218428565, gi... - gi\|218691001\|ref\|YP_002399213.1\| conserved hypothetical protein; putative NAD(P)-binding Rossman fol... gi\|218371570, gi... - gi\|218701584\|ref\|YP_002409213.1\| conserved hypothetical protein; putative NAD(P)-binding Rossman fol... gi\|218366637, gi... - gi\|218559868\|ref\|YP_002392781.1\| conserved hypothetical protein; putative NAD(P)-binding Rossman fol...	641.0	[0..1]	[541..1]
gi\|26109695, gi\|... - gi\|26249288\|ref\|NP_755328.1\| hypothetical protein c3453 [Escherichia coli CFT073], gi\|26109695\|gb\|AA... gi\|227834692, gi... - gi\|227888423\|ref\|ZP_04006228.1\| YqeB protein [Escherichia coli 83972], gi\|227834692\|gb\|EEJ45158.1\| Y...	641.0	[0..1]	[541..1]
gi\|157155346, gi... - gi\|75187592\|ref\|ZP_00700859.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ...	639.0	[0..1]	[541..1]
gi\|218433479, gi... - gi\|218706382\|ref\|YP_002413901.1\| conserved hypothetical protein; putative NAD(P)-binding Rossman fol... gi\|209920330, gi... - gi\|209920330\|ref\|YP_002294414.1\| hypothetical protein ECSE_3139 [Escherichia coli SE11], gi\|20991358... gi\|170517940, gi... - gi\|170680222\|ref\|YP_001745028.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli ... gi\|194418801, gi... - gi\|83569894\|ref\|ZP_00921342.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ...	637.0	[0..1]	[541..1]
gi\|193063500, gi... - gi\|75258475\|ref\|ZP_00729897.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ... gi\|194426155, gi... - gi\|75212510\|ref\|ZP_00712534.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ... gi\|191165988, gi... - gi\|191165988\|ref\|ZP_03027824.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli B...	637.0	[0..1]	[541..1]
gi\|254594227, gi... - gi\|254794827\|ref\|YP_003079664.1\| conserved protein with NAD(P)-binding Rossman fold [Escherichia col... gi\|13363220, gi\|... - gi\|15833002\|ref\|NP_311775.1\| putative synthase [Escherichia coli O157:H7 str. Sakai], gi\|13363220\|db... gi\|208741127, gi... - gi\|208821004\|ref\|ZP_03261324.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O... gi\|209162120, gi... - gi\|209400720\|ref\|YP_002272350.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli ... gi\|217327540, gi... - gi\|217327540\|ref\|ZP_03443623.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O... gi\|13363220, gi\|... - gi\|15833002\|ref\|NP_311775.1\| putative synthase [Escherichia coli O157:H7], gi\|13363220\|dbj\|BAB37171.... gi\|168800007, gi... - gi\|189377640\|gb\|EDU96056.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|209747580, gi... - pir\|\|H85942 probable synthases Z4214 [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|195936492 - gi\|195936492\|ref\|ZP_03081874.1\| putative synthase [Escherichia coli O157:H7 str. EC4024] gi\|208806358, gi... - gi\|208806358\|ref\|ZP_03248695.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O... gi\|15803412, gi\|... - gi\|15803412\|ref\|NP_289445.1\| putative synthase [Escherichia coli O157:H7 EDL933], gi\|12517396\|gb\|AAG... gi\|208813436, gi... - gi\|208813436\|ref\|ZP_03254765.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O... gi\|168766867, gi... - gi\|189363660\|gb\|EDU82079.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|187768745, gi... - gi\|187768745\|gb\|EDU32589.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|168778887, gi... - gi\|189003340\|gb\|EDU72326.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|168785720, gi... - gi\|189374080\|gb\|EDU92496.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|168747648, gi... - gi\|188017912\|gb\|EDU56034.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|168753812, gi... - gi\|189358668\|gb\|EDU77087.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:... gi\|168760002, gi... - gi\|189369358\|gb\|EDU87774.1\| putative xanthine dehydrogenase accessory factor [Escherichia coli O157:...	637.0	[0..1]	[541..1]
gi\|188491071, gi... - gi\|75515341\|ref\|ZP_00737525.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ...	637.0	[0..1]	[541..1]
gi\|74313433, gi\|... - gi\|74313433\|ref\|YP_311852.1\| putative synthases [Shigella sonnei Ss046], gi\|73856910\|gb\|AAZ89617.1\| ...	636.0	[0..1]	[541..1]
gi\|75230849 - gi\|75230849\|ref\|ZP_00717307.1\| COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF ...	617.0	[0..19]	[541..1]
gi\|90328601, gi\|... - gi\|90410360\|ref\|ZP_01218376.1\| putative protein yqeB [Photobacterium profundum 3TCK], gi\|90328601\|gb...	616.0	[0..1]	[531..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFTEAAKL EEQNCPFAMA QIVDSRGSTP RHSAQMLVRA DGSIVGTIGG GMVERKVIEE  60
   61 SLQALQERKP RLFHGRMARN GADAVGSDCG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.443697
Match:	PF02625.7
Description:	No description for PF02625.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.837	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase

Predicted Domain #2

Region A:
Residues: [91-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMSVFISVH GMRPRLVLIG AGHVNRAIAQ SAALLGFDIA VADIYRESLN PELFPPSTTL  60
   61 LHAESFGAAV EALDIRPDNF VLIATNNQDR EALDKLIEQP IAWLGLLASR RKVQLFLRQL 120
  121 REKGVAEEHI ARLHAPVGYN IGAETPQEIA ISVLAEILQV KNNAPGGLMM KPSHP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [266-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGHQLVVIRG AGDIASGVAL RLYHAGFKVI MLEVEKPTVI RCTVAFAQAV FDGEMTVEGV  60
   61 TARLATSSAE AMKLTERGFI PVMVDPACSL LDELKPLCVV DAILAKQNLG TRADMAPVTI 120
  121 ALGPGFTAGK DCHAVIETNR GHWLGQVIYS GCAQENTGV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [425-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGNIMGHTTR RVIRAPAAGI MRSNVKLGDL VKEGDVIAWI GEHEIKAPLT GMVRGLLNDG  60
   61 LAVVGGFKIG DIDPRGETAD FTSVSDKARA IGGGVLEALM MLMHQGVKAT KEVLEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.63
Match:	2dn8A
Description:	No description for 2dn8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits