YRC Public Data Repository - Protein Structure Prediction

Protein:	YPHE_ECOLI
Organism:	Escherichia coli
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPHE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|223490116, gi... - gi\|254478127\|ref\|ZP_05091510.1\| ABC transporter, ATP-binding protein [Carboxydibrachium pacificum DS... RBSA_CALS4 - Ribose import ATP-binding protein RbsA OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain... RBSA_THETN - Ribose import ATP-binding protein rbsA OS=Thermoanaerobacter tengcongensis GN=rbsA PE=3 SV=1	482.0	[0..8]	[502..2]
gi\|242258201, gi... - gi\|242258201\|ref\|ZP_04803027.1\| ABC transporter related protein [Thermoanaerobacter sp. X513], gi\|24... gi\|114843565, gi... - gi\|167038834\|ref\|YP_001661819.1\| ABC transporter related [Thermoanaerobacter sp. X514], gi\|166853074...	480.0	[0..8]	[502..2]
gi\|76587212, gi\|... - gi\|76797422\|ref\|ZP_00779741.1\| ABC transporter related [Thermoanaerobacter ethanolicus ATCC 33223], ... gi\|241882993, gi... - gi\|241904640\|ref\|ZP_04789319.1\| ABC transporter related protein [Thermoanaerobacter brockii subsp. f...	479.0	[0..8]	[502..2]
RBSA_BACLD - Ribose import ATP-binding protein RbsA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2...	478.0	[0..11]	[502..3]
RBSA_PECAS - Ribose import ATP-binding protein RbsA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-6... RBSA_ERWCT - Ribose import ATP-binding protein RbsA OS=Erwinia carotovora subsp. atroseptica GN=rbsA PE=3 SV=1	477.0	[0..8]	[502..2]
gi\|255337227, gi... - gi\|255337227\|ref\|ZP_05378108.1\| ABC transporter related protein [Thermoanaerobacter mathranii subsp.... gi\|255254727, gi... - gi\|255254727\|ref\|ZP_05334267.1\| ABC transporter related protein [Thermoanaerobacter italicus Ab9], g... XYLG_THEET - Xylose import ATP-binding protein xylG - Thermoanaerobacter ethanolicus (Clostridium thermohydrosulf... XYLG_THEP3 - Xylose import ATP-binding protein XylG OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 3...	473.0	[0..7]	[502..2]
gi\|77977918, gi\|... - gi\|77977918\|ref\|ZP_00833355.1\| COG1129: ABC-type sugar transport system, ATPase component [Yersinia ...	471.0	[0..8]	[502..2]
gi\|125972912, gi... - gi\|67917106\|ref\|ZP_00510780.1\| ABC transporter [Clostridium thermocellum ATCC 27405], gi\|67848939\|gb... gi\|196254109, gi... - gi\|196254109\|ref\|ZP_03152695.1\| ABC transporter related [Clostridium thermocellum DSM 4150], gi\|1961...	471.0	[0..10]	[502..6]
RBSA_LACLS - Ribose import ATP-binding protein RbsA OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rbsA P...	470.0	[0..11]	[502..3]

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Predicted Domain #1

Region A:
Residues: [1-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTATEAVPV AKVVAGNKRY PGVVALDNVN FTLNKGEVRA LLGKNGAGKS TLIRMLTGSE  60
   61 RPDSGDIWIG ETRLEGDEAT LTRRAAELGV RAVYQELSLV EGLTVAENLC LGQWPRRNGM 120
  121 IDYLQMAQDA QRCLQALGVD VSPEQLVSTL SPAQKQLVEI ARVMKGEPRV VILDEPTSSL 180
  181 ASAEVELVIS AVKKMSALGV AVIYVSHRME EIRRIASCAT VMRDGQVAGD VMLENTSTHH 240
  241 IVSLMLGRDH VDIAPVAPQE IVDQAVLEVR ALRHKPKLED ISFTLRRGEV LGIAGLLGAG 300
  301 RSELLKAIVG LEEYEQGEIV INGEKITRPD YGDMLKRGIG YTPENRKEAG IIPWLGVDEN 360
  361 TVLTNRQKIS ANGVLQWSTI RRLTEEVMQR MTVKAASSET PIGTLSGGNQ QKVVIGRWVY 420
  421 AASQILLLDE PTRGVDIEAK QQIYRIVREL AAEGKSVVFI SSEVEELPLV CDRILLLQHG 480
  481 TFSQEFHAPV NVDELMSAIL SVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits