YRC Public Data Repository - Protein Structure Prediction

Protein:	YPHA_ECOLI
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPHA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91691549, gi\|... - gi\|91778889\|ref\|YP_554097.1\| hypothetical protein Bxe_B1209 [Burkholderia xenovorans LB400], gi\|9169...	113.0	[0..4]	[140..1]
gi\|72610011, gi\|... - gi\|74017383\|ref\|ZP_00688007.1\| Surfeit locus 4-related [Burkholderia ambifaria AMMD], gi\|72610011\|gb...	110.0	[0..4]	[140..1]
gi\|83716320, gi\|... - gi\|83716320\|ref\|YP_439609.1\| DoxD-like family protein [Burkholderia thailandensis E264], gi\|83650145...	107.0	[0..2]	[139..44]
gi\|30042188, gi\|... - gi\|30063932\|ref\|NP_838103.1\| hypothetical protein S2762 [Shigella flexneri 2a str. 2457T], gi\|300421... gi\|170082153, gi... - gi\|170082153\|ref\|YP_001731473.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|89109349, gi\|... - gi\|89109349\|ref\|AP_003129.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|49176237, gi\|... - gi\|49176237\|ref\|NP_417038.3\| predicted inner membrane protein [Escherichia coli K12], gi\|1788893\|gb\|... gi\|7466392, gi\|1... - gi\|7466392\|pir\|\|F65031 hypothetical protein b2543 - Escherichia coli (strain K-12), gi\|2072114\|emb\|C... gi\|24113871, gi\|... - gi\|24113871\|ref\|NP_708381.1\| hypothetical protein SF2590 [Shigella flexneri 2a str. 301], gi\|2405296... gi\|242378143, gi... - gi\|251785870\|ref\|YP_003000174.1\| hypothetical protein B21_02399 [Escherichia coli BL21], gi\|24237814... gi\|254162517, gi... - gi\|254162517\|ref\|YP_003045625.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|253978585, gi... - gi\|254289278\|ref\|YP_003055026.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2...	104.0	[0..1]	[140..25]
gi\|27377504, gi\|... - gi\|27377504\|ref\|NP_769033.1\| hypothetical protein blr2393 [Bradyrhizobium japonicum USDA 110], gi\|27...	103.0	[0..8]	[139..58]
gi\|82713422, gi\|... - gi\|82739520\|ref\|ZP_00902320.1\| SURF4 domain protein [Pseudomonas putida F1], gi\|82713422\|gb\|EAP48536...	102.0	[0..4]	[140..19]
gi\|13362880 - gi\|13362880\|dbj\|BAB36832.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13362880 - gi\|13362880\|dbj\|BAB36832.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209763112, gi... - pir\|\|D85899 hypothetical protein yphA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12516949, gi\|... - gi\|15803069\|ref\|NP_289099.1\| hypothetical protein Z3815 [Escherichia coli O157:H7 EDL933], gi\|125169... gi\|218706046, gi... - gi\|218706046\|ref\|YP_002413565.1\| conserved hypothetical protein; putative inner membrane protein [Es...	102.0	[0..1]	[140..16]
gi\|218559463, gi... - gi\|218559463\|ref\|YP_002392376.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218428222, gi... - gi\|218690658\|ref\|YP_002398870.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226901416, gi... - gi\|237705050\|ref\|ZP_04535531.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211866, gi\|... - gi\|91211866\|ref\|YP_541852.1\| hypothetical protein UTI89_C2861 [Escherichia coli UTI89], gi\|91073440\|... gi\|117624765, gi... - gi\|117624765\|ref\|YP_853678.1\| hypothetical protein APECO1_3988 [Escherichia coli APEC O1], gi\|115513...	102.0	[0..1]	[140..16]
gi\|95110382 - gi\|95110382\|emb\|CAK15090.1\| conserved hypothetical protein; putative DoxD-like transmembrane protein... gi\|104781395, gi... - gi\|95110382\|emb\|CAK15090.1\| conserved hypothetical protein; putative DoxD-like transmembrane protein...	101.0	[0..4]	[140..1]
gi\|81246404, gi\|... - gi\|82544993\|ref\|YP_408940.1\| hypothetical protein SBO_2569 [Shigella boydii Sb227], gi\|81246404\|gb\|A...	101.0	[0..1]	[140..16]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLRYFDFG AARPVLLLIA RIAVVLIFII FGFPKMMGFD GTVQYMASLG APMPMLAAII  60
   61 AVVMEVPAAI LIVLGFFTRP LAVLFIFYTL GTAVIGHHYW DMTGDAVGPN MINFWKNVSI 120
  121 AGAFLLLAIT GPGAISLDRR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.508638
Match:	PF07681.3
Description:	No description for PF07681.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits