YRC Public Data Repository - Protein Structure Prediction

Protein:	YODC_ECOLI
Organism:	Escherichia coli
Length:	60 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YODC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62128195, gi\|... - gi\|62180562\|ref\|YP_216979.1\| hypothetical protein SC1992 [Salmonella enterica subsp. enterica serova...	107.0	[0..1]	[59..21]
gi\|16420522 - gi\|16420522\|gb\|AAL20898.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	105.0	[0..1]	[59..21]
gi\|197093503, gi... - gi\|197362026\|ref\|YP_002141663.1\| hypothetical protein SSPA0822 [Salmonella enterica subsp. enterica ... gi\|56127357, gi\|... - gi\|56413100\|ref\|YP_150175.1\| hypothetical protein SPA0882 [Salmonella enterica subsp. enterica serov... gi\|25512302, gi\|... - gi\|25512302\|pir\|\|AD0754 conserved hypothetical protein STY2195 [imported] - Salmonella enterica subs... gi\|29137004, gi\|... - gi\|29141377\|ref\|NP_804719.1\| hypothetical protein t0890 [Salmonella enterica subsp. enterica serovar... gi\|16760931 - gi\|16760931\|ref\|NP_456548.1\| hypothetical protein STY2195 [Salmonella enterica subsp. enterica serov...	105.0	[0..1]	[59..21]
gi\|75239150 - gi\|75239150\|ref\|ZP_00723127.1\| COG5475: Uncharacterized small protein [Escherichia coli F11] gi\|226900673, gi... - gi\|237705916\|ref\|ZP_04536397.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227837188, gi... - gi\|227885615\|ref\|ZP_04003420.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783718... gi\|110343654, gi... - gi\|110642062\|ref\|YP_669792.1\| hypothetical protein ECP_1890 [Escherichia coli 536], gi\|110343654\|gb\|... gi\|24113330, gi\|... - gi\|24113330\|ref\|NP_707840.1\| hypothetical protein SF2001 [Shigella flexneri 2a str. 301], gi\|2405234... gi\|26108632, gi\|... - gi\|26248228\|ref\|NP_754268.1\| hypothetical protein c2376 [Escherichia coli CFT073], gi\|26108632\|gb\|AA... gi\|30041644, gi\|... - gi\|30063392\|ref\|NP_837563.1\| hypothetical protein S2096 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|218699482, gi... - gi\|218699482\|ref\|YP_002407111.1\| hypothetical protein ECIAI39_1099 [Escherichia coli IAI39], gi\|2183...	103.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFMVSEEVT VKEGGPRMIV TGYSSGMVEC RWYDGYGVKR EAFHETELVP GEGSRSAEEV  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits