YRC Public Data Repository - Protein Structure Prediction

Protein:	YNFN_ECOLI
Organism:	Escherichia coli
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNFN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218368345, gi... - gi\|218561576\|ref\|YP_002394489.1\| hypothetical protein ECS88_5023 [Escherichia coli S88], gi\|21836834... gi\|117626708, gi... - gi\|117626708\|ref\|YP_860031.1\| hypothetical protein APECO1_2031 [Escherichia coli APEC O1], gi\|115515...	98.0	[0..1]	[51..39]
gi\|16129510, gi\|... - gb\|AAC74624.1\| orf, hypothetical protein; Qin prophage [Escherichia coli K12], gi\|16129510\|ref\|NP_4... gi\|7466193 - gi\|7466193\|pir\|\|B64910 hypothetical protein b1551 - Escherichia coli (strain K-12)	92.0	[0..1]	[51..13]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREYPNGEKT HLTVMAAGFP SLTGDHKVIY VAADRHVTSE EILEAAIRLL S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits