YRC Public Data Repository - Protein Structure Prediction

Protein:	YMJA_ECOLI
Organism:	Escherichia coli
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMJA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110343127, gi... - gi\|110641535\|ref\|YP_669265.1\| hypothetical protein ECP_1353 [Escherichia coli 536], gi\|110343127\|gb\|... gi\|194417956, gi... - gi\|83569480\|ref\|ZP_00920933.1\| hypothetical protein Sdys1_01002298 [Shigella dysenteriae 1012], gi\|1... gi\|91210595, gi\|... - gi\|91210595\|ref\|YP_540581.1\| hypothetical protein UTI89_C1572 [Escherichia coli UTI89], gi\|91072169\|... gi\|13361337, gi\|... - gi\|15831126\|ref\|NP_309899.1\| hypothetical protein ECs1872 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75179051, gi\|... - gi\|75179051\|ref\|ZP_00699069.1\| hypothetical protein SboyB_01000844 [Shigella boydii BS512], gi\|18773... gi\|157155302, gi... - gi\|75190381\|ref\|ZP_00703648.1\| hypothetical protein EcolE_01003683 [Escherichia coli E24377A], gi\|15... gi\|75195444, gi\|... - gi\|75195444\|ref\|ZP_00705514.1\| hypothetical protein EcolH_01001237 [Escherichia coli HS], gi\|1571608... gi\|254592290, gi... - gi\|254792890\|ref\|YP_003077727.1\| hypothetical protein ECSP_1820 [Escherichia coli O157:H7 str. TW143... gi\|190904772, gi... - gi\|75231908\|ref\|ZP_00718249.1\| hypothetical protein EcolB7_01000226 [Escherichia coli B7A], gi\|19116... gi\|226900086, gi... - gi\|237705329\|ref\|ZP_04535810.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|75242100, gi\|... - gi\|75242100\|ref\|ZP_00725894.1\| hypothetical protein EcolF_01001043 [Escherichia coli F11], gi\|191171... gi\|227886264, gi... - gi\|227886264\|ref\|ZP_04004069.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783646... gi\|81241051, gi\|... - gi\|82776903\|ref\|YP_403252.1\| hypothetical protein SDY_1637 [Shigella dysenteriae Sd197], gi\|81241051... gi\|82544248, gi\|... - gi\|82544248\|ref\|YP_408195.1\| hypothetical protein SBO_1767 [Shigella boydii Sb227], gi\|81245659\|gb\|A... gi\|195939705 - gi\|195939705\|ref\|ZP_03085087.1\| hypothetical protein EscherichcoliO157_25420 [Escherichia coli O157:... gi\|208810848, gi... - gi\|208810848\|ref\|ZP_03252681.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208815465, gi... - gi\|208815465\|ref\|ZP_03256644.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208819823, gi... - gi\|208819823\|ref\|ZP_03260143.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209396371, gi... - gi\|209396371\|ref\|YP_002270356.1\| hypothetical protein ECH74115_1936 [Escherichia coli O157:H7 str. E... gi\|217329448, gi... - gi\|217329448\|ref\|ZP_03445528.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218553853, gi... - gi\|218553853\|ref\|YP_002386766.1\| hypothetical protein ECIAI1_1320 [Escherichia coli IAI1], gi\|218360... gi\|218558290, gi... - gi\|218558290\|ref\|YP_002391203.1\| hypothetical protein ECS88_1441 [Escherichia coli S88], gi\|21836505... gi\|188016595, gi... - gi\|188016595\|gb\|EDU54717.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168755976, gi... - gi\|189356799\|gb\|EDU75218.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189367039, gi... - gi\|189367039\|gb\|EDU85455.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189361565, gi... - gi\|189361565\|gb\|EDU79984.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187769243, gi... - gi\|187769243\|gb\|EDU33087.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168784055, gi... - gi\|188998710\|gb\|EDU67696.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168788380, gi... - gi\|189371897\|gb\|EDU90313.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189378004, gi... - gi\|189378004\|gb\|EDU96420.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|218689292, gi... - gi\|218689292\|ref\|YP_002397504.1\| hypothetical protein ECED1_1510 [Escherichia coli ED1a], gi\|2184268... gi\|218694871, gi... - gi\|218694871\|ref\|YP_002402538.1\| hypothetical protein EC55989_1457 [Escherichia coli 55989], gi\|2183... gi\|26108038, gi\|... - gi\|26247636\|ref\|NP_753676.1\| hypothetical protein c1772 [Escherichia coli CFT073], gi\|26108038\|gb\|AA... gi\|209771768, gi... - pir\|\|A85756 hypothetical protein ymjA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515482, gi\|... - gi\|15801873\|ref\|NP_287893.1\| hypothetical protein Z2493 [Escherichia coli O157:H7 EDL933], gi\|125154... gi\|13361337, gi\|... - gi\|15831126\|ref\|NP_309899.1\| hypothetical protein ECs1872 [Escherichia coli O157:H7], gi\|13361337\|db...	159.0	[0..1]	[81..1]
gi\|253977490, gi... - gi\|254288183\|ref\|YP_003053931.1\| hypothetical protein ECD_01272 [Escherichia coli BL21(DE3)], gi\|253... gi\|194436992, gi... - gi\|83587434\|ref\|ZP_00926062.1\| hypothetical protein Ecol1_01001428 [Escherichia coli 101-1], gi\|1944... gi\|242377074, gi... - gi\|251784801\|ref\|YP_002999105.1\| hypothetical protein B21_01283 [Escherichia coli BL21], gi\|24237707... gi\|253973276, gi... - gi\|254161375\|ref\|YP_003044483.1\| hypothetical protein ECB_01272 [Escherichia coli B str. REL606], gi...	158.0	[0..1]	[81..1]
gi\|75515086 - gi\|75515086\|ref\|ZP_00737290.1\| COG3385: FOG: Transposase and inactivated derivatives [Escherichia co...	153.0	[0..1]	[66..1]
gi\|50120515, gi\|... - gi\|50120515\|ref\|YP_049682.1\| hypothetical protein ECA1581 [Pectobacterium atrosepticum SCRI1043], gi...	135.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHDIPLKYF DIADEYATEC AEPVAEAERT PLAHYFQLLL TRLMNNEEIS EEAQHEMAAE  60
   61 AGINPVRIDE IAEFLNQWGN E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.965	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits