YRC Public Data Repository - Protein Structure Prediction

Protein:	YMCC_ECOLI
Organism:	Escherichia coli
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMCC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|168747399, gi... - gi\|188018121\|gb\|EDU56243.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|13360602, gi\|... - gi\|15830396\|ref\|NP_309169.1\| putative regulator [Escherichia coli O157:H7], gi\|13360602\|dbj\|BAB34565... gi\|209774166, gi... - pir\|\|B85634 probable regulator ymcC [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|217321767, gi... - gi\|217325546\|ref\|ZP_03441630.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|209161344, gi... - gi\|209399944\|ref\|YP_002269712.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia... gi\|15800907, gi\|... - gi\|15800907\|ref\|NP_286923.1\| putative regulator [Escherichia coli O157:H7 EDL933], gi\|12514251\|gb\|AA... gi\|208737795, gi... - gi\|208822310\|ref\|ZP_03262629.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|13360602, gi\|... - gi\|15830396\|ref\|NP_309169.1\| putative regulator [Escherichia coli O157:H7 str. Sakai], gi\|13360602\|d... gi\|189001216, gi... - gi\|189001216\|gb\|EDU70202.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168767484, gi... - gi\|189363180\|gb\|EDU81599.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168763223, gi... - gi\|189366558\|gb\|EDU84974.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168754307, gi... - gi\|189358256\|gb\|EDU76675.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|208815076, gi... - gi\|208815076\|ref\|ZP_03256255.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|208808426, gi... - gi\|208808426\|ref\|ZP_03250763.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|195935244 - gi\|195935244\|ref\|ZP_03080626.1\| putative regulator [Escherichia coli O157:H7 str. EC4024] gi\|168800616, gi... - gi\|189377085\|gb\|EDU95501.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|254792243, gi... - gi\|254792243\|ref\|YP_003077080.1\| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str....	282.0	[0..1]	[214..1]
gi\|82776276, gi\|... - gi\|82776276\|ref\|YP_402625.1\| putative regulator [Shigella dysenteriae Sd197], gi\|81240424\|gb\|ABB6113...	282.0	[0..1]	[214..1]
gi\|78687126, gi\|... - gi\|78687126\|ref\|ZP_00851882.1\| lipoprotein, putative [Shewanella sp. ANA-3], gi\|78505126\|gb\|EAP18663...	280.0	[0..1]	[212..8]
gi\|24374670, gi\|... - gi\|24374670\|ref\|NP_718713.1\| putative lipoprotein [Shewanella oneidensis MR-1], gi\|24349312\|gb\|AAN56... SO3157 - lipoprotein putative	277.0	[0..2]	[212..9]
gi\|82495296, gi\|... - gi\|82495296\|ref\|ZP_00880873.1\| lipoprotein, putative [Shewanella sp. MR-4], gi\|82406799\|gb\|EAP47462....	276.0	[0..1]	[212..8]
gi\|24112399, gi\|... - gi\|24112399\|ref\|NP_706909.1\| putative regulator [Shigella flexneri 2a str. 301], gi\|24051272\|gb\|AAN4... gi\|110805000, gi... - gi\|110805000\|ref\|YP_688520.1\| putative regulator [Shigella flexneri 5 str. 8401], gi\|110614548\|gb\|AB... gi\|30062523, gi\|... - gi\|30062523\|ref\|NP_836694.1\| putative regulator [Shigella flexneri 2a str. 2457T], gi\|30040769\|gb\|AA...	275.0	[0..1]	[214..1]
gi\|78690303, gi\|... - gi\|78690303\|ref\|ZP_00854952.1\| lipoprotein, putative [Shewanella sp. MR-7], gi\|78510332\|gb\|EAP23705....	275.0	[0..1]	[212..8]
gi\|126175065, gi... - gi\|68544321\|ref\|ZP_00583977.1\| lipoprotein, putative [Shewanella baltica OS155], gi\|68517967\|gb\|EAN4...	272.0	[0..1]	[212..7]
gi\|145565307, gi... - gi\|77814082\|ref\|ZP_00813348.1\| lipoprotein, putative [Shewanella putrefaciens CN-32], gi\|77810827\|gb...	269.0	[0..1]	[212..8]
gi\|82741352, gi\|... - gi\|82741352\|ref\|ZP_00904075.1\| lipoprotein, putative [Shewanella sp. W3-18-1], gi\|82721281\|gb\|EAP561...	268.0	[0..1]	[212..8]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLILSIFA LFLAGCTHSQ QSMVDTFRAS LFDNQDITVA DQQIQALPYS TMYLRLNEGQ  60
   61 RIFVVLGYIE QEQSKWLSQD NAMLVTHNGR LLKTVKLNNN LLEVTNSGQD PLRNALAIKD 120
  121 GSRWTRDILW SEDNHFRSAT LSSTFSFAGL ETLNIAGRNV LCNVWQEEVT STRPEKQWQN 180
  181 TFWVDSATGQ VRQSRQMLGA GVIPVEMTFL KPAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.69897
Match:	2in5A
Description:	No description for 2in5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits