YRC Public Data Repository - Protein Structure Prediction

Protein:	YLII_ECOLI
Organism:	Escherichia coli
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLII_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187768216, gi... - gi\|187768216\|gb\|EDU32060.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|189003053, gi... - gi\|189003053\|gb\|EDU72039.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|189373052, gi... - gi\|189373052\|gb\|EDU91468.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|168799881, gi... - gi\|189377796\|gb\|EDU96212.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|188015680, gi... - gi\|188015680\|gb\|EDU53802.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|189356252, gi... - gi\|189356252\|gb\|EDU74671.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|168763313, gi... - gi\|189366490\|gb\|EDU84906.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|189363445, gi... - gi\|189363445\|gb\|EDU81864.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 str.... gi\|15830171, gi\|... - gi\|15830171\|ref\|NP_308944.1\| putative dehydrogenase [Escherichia coli O157:H7], gi\|13360376\|dbj\|BAB3... gi\|209775562, gi... - pir\|\|A85594 probable dehydrogenase yliI [imported] - Escherichia coli (strain O157:H7, substrain ED... gi\|208822395, gi... - gi\|208822395\|ref\|ZP_03262714.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 ... gi\|253972815, gi... - gi\|254160914\|ref\|YP_003044022.1\| predicted dehydrogenase [Escherichia coli B str. REL606], gi\|253972... gi\|12513849, gi\|... - gi\|15800589\|ref\|NP_286603.1\| putative dehydrogenase [Escherichia coli O157:H7 EDL933], gi\|12513849\|g... gi\|209399419, gi... - gi\|209399419\|ref\|YP_002269506.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7... gi\|254792033, gi... - gi\|254792033\|ref\|YP_003076870.1\| predicted dehydrogenase [Escherichia coli O157:H7 str. TW14359], gi... gi\|217321813, gi... - gi\|217325592\|ref\|ZP_03441676.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 ... gi\|194438387, gi... - gi\|194438387\|ref\|ZP_03070477.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli 101-1], ... gi\|15830171, gi\|... - gi\|15830171\|ref\|NP_308944.1\| putative dehydrogenase [Escherichia coli O157:H7 str. Sakai], gi\|133603... gi\|195936882 - gi\|195936882\|ref\|ZP_03082264.1\| putative dehydrogenase [Escherichia coli O157:H7 str. EC4024] gi\|208727785, gi... - gi\|208807984\|ref\|ZP_03250321.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 ... gi\|208815919, gi... - gi\|208815919\|ref\|ZP_03257098.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli O157:H7 ...	355.0	[0..1]	[371..1]
gi\|73854858, gi\|... - gi\|74311381\|ref\|YP_309800.1\| putative dehydrogenase [Shigella sonnei Ss046], gi\|73854858\|gb\|AAZ87565...	354.0	[0..1]	[371..1]
gi\|91209871, gi\|... - gi\|91209871\|ref\|YP_539857.1\| hypothetical protein UTI89_C0840 [Escherichia coli UTI89], gi\|91071445\|... gi\|115512141, gi... - gi\|117623017\|ref\|YP_851930.1\| putative dehydrogenase [Escherichia coli APEC O1], gi\|115512141\|gb\|ABJ... gi\|218364510, gi... - gi\|218557741\|ref\|YP_002390654.1\| PQQ-dependent aldose sugar dehydrogenase precursor (asd) [Escherich... gi\|237707200, gi... - gi\|237707200\|ref\|ZP_04537681.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	354.0	[0..1]	[371..1]
gi\|190905970, gi... - gi\|191173720\|ref\|ZP_03035243.1\| glucose / sorbosone dehydrogenase protein [Escherichia coli F11], gi... gi\|110641039, gi... - gi\|110641039\|ref\|YP_668769.1\| hypothetical protein ECP_0851 [Escherichia coli 536], gi\|110342631\|gb\|... gi\|26107211, gi\|... - gi\|26246812\|ref\|NP_752852.1\| hypothetical protein c0922 [Escherichia coli CFT073], gi\|26107211\|gb\|AA... gi\|218426184, gi... - gi\|218688620\|ref\|YP_002396832.1\| PQQ-dependent aldose sugar dehydrogenase precursor (asd) [Escherich... gi\|227838951, gi... - gi\|227884199\|ref\|ZP_04002004.1\| aldose sugar dehydrogenase yliI [Escherichia coli 83972], gi\|2278389...	354.0	[0..1]	[371..1]
gi\|50121615, gi\|... - gi\|50121615\|ref\|YP_050782.1\| hypothetical protein ECA2691 [Pectobacterium atrosepticum SCRI1043], gi...	353.0	[0..6]	[367..26]
gi\|67154058, gi\|... - gi\|67154058\|ref\|ZP_00415803.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP], gi\|6708... gi\|67154058, gi\|... - gi\|67154058\|ref\|ZP_00415803.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP], ref\|ZP_...	351.0	[0..5]	[367..12]
gi\|95111531 - gi\|95111531\|emb\|CAK16251.1\| putative Glucose/sorbosone dehydrogenase [Pseudomonas entomophila L48] gi\|95111531, gi\|... - gi\|95111531\|emb\|CAK16251.1\| putative Glucose/sorbosone dehydrogenase [Pseudomonas entomophila L48], ...	344.0	[0..2]	[367..4]
gi\|82737778, gi\|... - gi\|82737778\|ref\|ZP_00900623.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82715151\|g...	344.0	[0..2]	[371..9]
gi\|75230687 - gi\|75230687\|ref\|ZP_00717158.1\| COG2133: Glucose/sorbosone dehydrogenases [Escherichia coli B7A]	343.0	[0..9]	[371..1]
gi\|75236106 - gi\|75236106\|ref\|ZP_00720230.1\| COG2133: Glucose/sorbosone dehydrogenases [Escherichia coli E110019] gi\|75189878 - gi\|75189878\|ref\|ZP_00703145.1\| COG2133: Glucose/sorbosone dehydrogenases [Escherichia coli E24377A]	342.0	[0..9]	[371..1]

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Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRQSFFLVP LICLSSALWA APATVNVEVL QDKLDHPWAL AFLPDNHGML ITLRGGELRH  60
   61 WQAGKGLSAP LSGVPDVWAH GQGGLLDVVL APDFAQSRRI WLSYSEVGDD GKAGTAVGYG 120
  121 RLSDDLSKVT DFRTVFRQMP KLSTGNHFGG RLVFDGKGYL FIALGENNQR PTAQDLDKLQ 180
  181 GKLVRLTDQG EIPDDNPFIK ESGARAEIWS YGIRNPQGMA MNPWSNALWL NEHGPRGGDE 240
  241 INIPQKGKNY GWPLATWGIN YSGFKIPEAK GEIVAGTEQP VFYWKDSPAV SGMAFYNSDK 300
  301 FPQWQQKLFI GALKDKDVIV MSVNGDKVTE DGRILTDRGQ RIRDVRTGPD GYLYVLTDES 360
  361 SGELLKVSPR N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	2g8sA
Description:	No description for 2g8sA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits