YRC Public Data Repository - Protein Structure Prediction

Protein:	YLBA_ECOLI
Organism:	Escherichia coli
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLBA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46317876, gi\|... - gi\|78061063\|ref\|YP_370971.1\| hypothetical protein Bcep18194_B0211 [Burkholderia sp. 383], gi\|7796894...	302.0	[0..2]	[261..5]
gi\|118649246, gi... - gi\|118713382\|ref\|ZP_01565948.1\| protein of unknown function DUF861, cupin_3 [Burkholderia cenocepaci... gi\|67667364, gi\|... - gi\|67667364\|ref\|ZP_00464589.1\| Protein of unknown function DUF923 [Burkholderia cenocepacia HI2424],... gi\|67092165, gi\|... - gi\|67660217\|ref\|ZP_00457568.1\| Protein of unknown function DUF861:Protein of unknown function DUF861...	302.0	[0..2]	[261..45]
gi\|72608592, gi\|... - gi\|74018659\|ref\|ZP_00689279.1\| Protein of unknown function DUF861 [Burkholderia ambifaria AMMD], gi\|...	302.0	[0..2]	[261..5]
gi\|107027755, gi... - gi\|107027755\|ref\|YP_625266.1\| hypothetical protein Bcen_5420 [Burkholderia cenocepacia AU 1054], gi\|... gi\|170737187, gi... - gi\|170737187\|ref\|YP_001778447.1\| allantoin catabolism protein [Burkholderia cenocepacia MC0-3], gi\|1... gi\|84353037 - gi\|84353037\|ref\|ZP_00977977.1\| COG3257: Uncharacterized protein, possibly involved in glyoxylate uti... gi\|116651535, gi... - gi\|116693535\|ref\|YP_839068.1\| hypothetical protein Bcen2424_5442 [Burkholderia cenocepacia HI2424], ...	300.0	[0..2]	[261..5]
gi\|46322856, gi\|... - gi\|67542176\|ref\|ZP_00420113.1\| Protein of unknown function DUF861:Protein of unknown function DUF861...	300.0	[0..2]	[261..5]
gi\|150030993, gi... - gi\|150376446\|ref\|YP_001313042.1\| hypothetical protein Smed_4304 [Sinorhizobium medicae WSM419], gi\|1...	298.0	[0..2]	[261..4]
gi\|84359041 - gi\|84359041\|ref\|ZP_00983801.1\| COG3257: Uncharacterized protein, possibly involved in glyoxylate uti...	298.0	[0..3]	[261..6]
gi\|114545044, gi... - gi\|114762426\|ref\|ZP_01441884.1\| hypothetical protein R2601_01375 [Roseovarius sp. HTCC2601], gi\|1145...	297.0	[0..3]	[261..5]
gi\|25357835 - pir\|\|G96015 conserved hypothetical protein SMb20684 [imported] - Sinorhizobium meliloti (strain 1021... gi\|16265139, gi\|... - gi\|16265139\|ref\|NP_437931.1\| hypothetical protein SM_b20684 [Sinorhizobium meliloti 1021], gi\|151412...	296.0	[0..2]	[261..4]
gi\|89069898, gi\|... - gi\|89069898\|ref\|ZP_01157232.1\| hypothetical protein OG2516_06337 [Oceanicola granulosus HTCC2516], g...	296.0	[0..3]	[261..5]

Back

Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYLNNVTGY REDLLANRAI VKHGNFALLT PDGLVKNIIP GFENCDATIL STPKLGASFV  60
   61 DYLVTLHQNG GNQQGFGGEG IETFLYVISG NITAKAEGKT FALSEGGYLY CPPGSLMTFV 120
  121 NAQAEDSQIF LYKRRYVPVE GYAPWLVSGN ASELERIHYE GMDDVILLDF LPKELGFDMN 180
  181 MHILSFAPGA SHGYIETHVQ EHGAYILSGQ GVYNLDNNWI PVKKGDYIFM GAYSLQAGYG 240
  241 VGRGEAFSYI YSKDCNRDVE I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.09691
Match:	1rc6A
Description:	Crystal structure of Ylba, a hypothetical protein from E. Coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits