YRC Public Data Repository - Protein Structure Prediction

Protein:	YJIX_ECOLI
Organism:	Escherichia coli
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJIX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194448261, gi... - gi\|194448261\|ref\|YP_002048554.1\| hypothetical protein SeHA_C4937 [Salmonella enterica subsp. enteric... gi\|194445659, gi... - gi\|194445659\|ref\|YP_002043773.1\| hypothetical protein SNSL254_A4885 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=yjiX] [protein=putative cytoplasmic protein] [protein_id=YP_005240871.1] [location=complement(... gi\|194711350, gi... - gi\|194735848\|ref\|YP_002117448.1\| hypothetical protein SeSA_A4784 [Salmonella enterica subsp. enteric... gi\|194472596, gi... - gi\|194472596\|ref\|ZP_03078580.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205348785, gi... - gi\|205348785\|gb\|EDZ35416.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205337063, gi... - gi\|205337063\|gb\|EDZ23827.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168821015, gi... - gi\|205342296\|gb\|EDZ29060.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168464556, gi... - gi\|195632654\|gb\|EDX51108.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167991330, gi... - gi\|205330412\|gb\|EDZ17176.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167551211, gi... - gi\|205323828\|gb\|EDZ11667.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168234662, gi... - gi\|197291992\|gb\|EDY31342.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168232887, gi... - gi\|205333015\|gb\|EDZ19779.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910693 - gi\|238910693\|ref\|ZP_04654530.1\| hypothetical protein SentesTe_06083 [Salmonella enterica subsp. ente... gi\|161617837, gi... - gi\|161617837\|ref\|YP_001591802.1\| hypothetical protein SPAB_05701 [Salmonella enterica subsp. enteric... gi\|213609232 - gi\|213609232\|ref\|ZP_03369058.1\| hypothetical protein SentesTyp_01298 [Salmonella enterica subsp. ent... gi\|62182953, gi\|... - gi\|62182953\|ref\|YP_219370.1\| hypothetical protein SC4383 [Salmonella enterica subsp. enterica serova... gi\|213584465 - gi\|213584465\|ref\|ZP_03366291.1\| hypothetical protein SentesTyph_25870 [Salmonella enterica subsp. en... gi\|56416315, gi\|... - gi\|56416315\|ref\|YP_153390.1\| hypothetical protein SPA4352 [Salmonella enterica subsp. enterica serov... gi\|213864759 - gi\|213864759\|ref\|ZP_03386878.1\| hypothetical protein SentesT_33235 [Salmonella enterica subsp. enter... gi\|213648573 - gi\|213648573\|ref\|ZP_03378626.1\| hypothetical protein SentesTy_15584 [Salmonella enterica subsp. ente... gi\|213051849 - gi\|213051849\|ref\|ZP_03344727.1\| hypothetical protein Salmoneentericaenterica_02288 [Salmonella enter... gi\|213026742 - gi\|213026742\|ref\|ZP_03341189.1\| hypothetical protein Salmonelentericaenterica_31560 [Salmonella ente... gi\|213428395 - gi\|213428395\|ref\|ZP_03361145.1\| hypothetical protein SentesTyphi_24334 [Salmonella enterica subsp. e... gi\|213421496 - gi\|213421496\|ref\|ZP_03354562.1\| hypothetical protein Salmonentericaenterica_28719 [Salmonella enteri... gi\|204323745, gi... - gi\|204927080\|ref\|ZP_03218282.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200387855, gi... - gi\|200387855\|ref\|ZP_03214467.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|207859660, gi... - gi\|207859660\|ref\|YP_002246311.1\| hypothetical protein SEN4296 [Salmonella enterica subsp. enterica s... gi\|205275035, gi... - gi\|205355254\|ref\|YP_002229055.1\| hypothetical protein SG4361 [Salmonella enterica subsp. enterica se... gi\|197242989, gi... - gi\|197264734\|ref\|ZP_03164808.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197213882, gi... - gi\|197250179\|ref\|YP_002149483.1\| hypothetical protein SeAg_B4858 [Salmonella enterica subsp. enteric... gi\|197940103, gi... - gi\|198245587\|ref\|YP_002218407.1\| hypothetical protein SeD_A4944 [Salmonella enterica subsp. enterica... gi\|197096715, gi... - gi\|197365238\|ref\|YP_002144875.1\| hypothetical protein SSPA4041 [Salmonella enterica subsp. enterica ... gi\|16767775, gi\|... - gi\|16767775\|ref\|NP_463390.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16423098\|... gi\|25513444, gi\|... - gi\|25513444\|pir\|\|AI1069 conserved hypothetical protein STY4889 [imported] - Salmonella enterica subs... gi\|16763337 - gi\|16763337\|ref\|NP_458954.1\| hypothetical protein STY4889 [Salmonella enterica subsp. enterica serov... gi\|29140454, gi\|... - gi\|29144815\|ref\|NP_808157.1\| hypothetical protein t4581 [Salmonella enterica subsp. enterica serovar... gi\|213999644 - gi\|213999644\|ref\|ZP_03410379.1\| hypothetical protein Salmonellentericaenterica_02577 [Salmonella ent... gi\|213982203 - gi\|213982203\|ref\|ZP_03409462.1\| hypothetical protein Salmonellaentericaenterica_50721 [Salmonella en... gi\|224470882, gi... - gi\|224586354\|ref\|YP_002640153.1\| hypothetical protein SPC_4668 [Salmonella enterica subsp. enterica ...	112.0	[0..1]	[67..1]
gi\|49610653, gi\|... - gi\|50120127\|ref\|YP_049294.1\| hypothetical protein ECA1188 [Pectobacterium atrosepticum SCRI1043], gi...	111.0	[0..1]	[67..2]
gi\|156530811, gi... - gi\|156932557\|ref\|YP_001436473.1\| hypothetical protein ESA_00338 [Enterobacter sakazakii ATCC BAA-894... gi\|112702906 - gi\|112702906\|emb\|CAL36232.1\| hypothetical protein [Enterobacter sakazakii]	110.0	[0..1]	[67..1]
gi\|25497290 - gi\|25497290\|pir\|\|C86134 hypothetical protein yjiX [imported] - Escherichia coli (strain O157:H7, su... gi\|12519372, gi\|... - gi\|15804926\|ref\|NP_290968.1\| hypothetical protein Z5952 [Escherichia coli O157:H7 EDL933], gi\|125193...	110.0	[0..1]	[67..1]
gi\|150962994, gi... - gi\|94413092\|ref\|ZP_01292984.1\| hypothetical protein PaerP_01005099 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099731 - gi\|107099731\|ref\|ZP_01363649.1\| hypothetical protein PaerPA_01000749 [Pseudomonas aeruginosa PACS2] gi\|15599801, gi\|... - gi\|9950855\|gb\|AAG07993.1\|AE004874_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218773930, gi... - gi\|218893702\|ref\|YP_002442571.1\| hypothetical protein PLES_49901 [Pseudomonas aeruginosa LESB58], gi... gi\|11348218 - pir\|\|G83070 conserved hypothetical protein PA4605 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116052747, gi... - gi\|46165051\|ref\|ZP_00135932.2\| COG2879: Uncharacterized small protein [Pseudomonas aeruginosa UCBPP-...	108.0	[0..1]	[67..1]
gi\|70732656, gi\|... - gi\|70732656\|ref\|YP_262419.1\| hypothetical protein PFL_5351 [Pseudomonas fluorescens Pf-5], gi\|683469...	108.0	[0..1]	[67..1]
gi\|126359973, gi... - gi\|167035625\|ref\|YP_001670856.1\| hypothetical protein PputGB1_4634 [Pseudomonas putida GB-1], gi\|166... tr\|I7C0S1\|I7C0S1... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0813 PE=4 SV=1 tr\|E4R4X6\|E4R4X6... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4336 PE=4 SV=1 gi\|26991324, gi\|... - gi\|26991324\|ref\|NP_746749.1\| hypothetical protein PP_4640 [Pseudomonas putida KT2440], gi\|24986384\|g... gi\|82714843, gi\|... - gi\|82738066\|ref\|ZP_00900906.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714843\|g...	107.0	[0..1]	[67..1]
gi\|23105550, gi\|... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], ref... gi\|226721064, gi... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], gi\|...	107.0	[0..1]	[67..1]
gi\|213966762, gi... - gi\|213966762\|ref\|ZP_03394913.1\| hypothetical protein PSPTOT1_0520 [Pseudomonas syringae pv. tomato T... gi\|237801449 - gi\|237801449\|ref\|ZP_04589910.1\| hypothetical protein Psyrpo1_21646 [Pseudomonas syringae pv. oryzae ... gi\|71555408, gi\|... - gi\|71734855\|ref\|YP_276446.1\| hypothetical protein PSPPH_4329 [Pseudomonas syringae pv. phaseolicola ... gi\|115265652 - gi\|115265652\|dbj\|BAF32913.1\| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola] gi\|115265598 - gi\|115265598\|dbj\|BAF32860.1\| conserved hypothetical protein [Pseudomonas syringae pv. actinidiae]	107.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGNLGQAKK YLGQAAKMLI GIPDYDNYVE HMKTNHPDKP YMSYEEFFRE RQNARYGGDG  60
   61 KGGMRCC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.180456
Match:	PF04328.4
Description:	No description for PF04328.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits