YRC Public Data Repository - Protein Structure Prediction

Protein:	YJIT_ECOLI
Organism:	Escherichia coli
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJIT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90111736, gi\|... - gi\|90111736\|ref\|NP_418762.2\| hypothetical protein b4342 [Escherichia coli K12], gi\|87082428\|gb\|AAC77... gi\|85677084, gi\|... - gi\|89111053\|ref\|AP_004833.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	849.0	[0..17]	[521..1]
gi\|56416280, gi\|... - gi\|56416280\|ref\|YP_153355.1\| hypothetical protein SPA4315 [Salmonella enterica subsp. enterica serov... gi\|197096680, gi... - gi\|197365203\|ref\|YP_002144840.1\| hypothetical protein SSPA4006 [Salmonella enterica subsp. enterica ...	778.0	[0..17]	[519..1]
gi\|29140420, gi\|... - gi\|29144781\|ref\|NP_808123.1\| hypothetical protein t4545 [Salmonella enterica subsp. enterica serovar... gi\|25512630, gi\|... - gi\|25512630\|pir\|\|AE1065 conserved hypothetical protein STY4851 [imported] - Salmonella enterica subs... gi\|16763303 - gi\|16763303\|ref\|NP_458920.1\| hypothetical protein STY4851 [Salmonella enterica subsp. enterica serov... gi\|213648423 - gi\|213648423\|ref\|ZP_03378476.1\| hypothetical protein SentesTy_14739 [Salmonella enterica subsp. ente... gi\|213161070 - gi\|213161070\|ref\|ZP_03346780.1\| hypothetical protein Salmoneentericaenterica_13918 [Salmonella enter...	775.0	[0..17]	[519..1]
gi\|77953154, gi\|... - gi\|77953154\|ref\|ZP_00817564.1\| hypothetical protein MaquDRAFT_1724 [Marinobacter aquaeolei VT8], gi\|...	526.0	[0..27]	[507..8]
gi\|78687157, gi\|... - gi\|78687157\|ref\|ZP_00851912.1\| hypothetical protein Shewana3DRAFT_0719 [Shewanella sp. ANA-3], gi\|78...	513.0	[0..27]	[505..6]
gi\|85694890, gi\|... - gi\|85711389\|ref\|ZP_01042448.1\| hypothetical protein OS145_01682 [Idiomarina baltica OS145], gi\|85694...	489.0	[0..28]	[504..4]
gi\|90410152, gi\|... - gi\|90410152\|ref\|ZP_01218169.1\| hypothetical protein P3TCK_05276 [Photobacterium profundum 3TCK], gi\|...	346.0	[0..32]	[508..8]
gi\|254225982, gi... - gi\|75820065\|ref\|ZP_00750122.1\| hypothetical protein VchoV5_01001053 [Vibrio cholerae V51], gi\|254225...	343.0	[0..32]	[506..8]
gi\|53755239, gi\|... - gi\|54295407\|ref\|YP_127822.1\| hypothetical protein lpl2493 [Legionella pneumophila str. Lens], gi\|537...	339.0	[0..18]	[504..4]
gi\|15834513, gi\|... - gi\|15834513\|ref\|NP_313286.1\| hypothetical protein ECs5259 [Escherichia coli O157:H7], gi\|13364737\|db... gi\|25391925, gi\|... - pir\|\|G86127 hypothetical protein Z5897 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15834513, gi\|... - gi\|15834513\|ref\|NP_313286.1\| hypothetical protein ECs5259 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|15804876, gi\|... - gi\|15804876\|ref\|NP_290917.1\| hypothetical protein Z5897 [Escherichia coli O157:H7 EDL933], gi\|125193... gi\|254796302, gi... - gi\|254796302\|ref\|YP_003081139.1\| hypothetical protein ECSP_5384 [Escherichia coli O157:H7 str. TW143...	312.0	[0..27]	[504..7]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWGFVFVSF ISKELALGQS EYISWVKCTS WLSNFVNLRG LRQPDGRPLY EYHATNDEYT  60
   61 QLTQLLRAVG QSQSNICNRD FAACFVLFCS EWYRRDYERQ C

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWTWDPIYKK IGISFTATEL GTIVPKGMED YWLRPIRFYE SERRNFLGTL FSEGGLPFRL  60
   61 LKESDSRFLA VFSRILGQYE QAKQSGFSAL SLARAVIEKS ALPTVFSEDT SVELISHMAD 120
  121 NLNSLVLTHN LINHKEPVQQ LEKVHPTWRS EFPIPLDDET GTHFLNGLLC AASVEAKPRL 180
  181 QK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSTRCQFYW SEKHPDELRV IVSLPDEVSF PVTSEPSTTR FELAICEDGE EVSGLGPAYA  60
   61 SLENRQATVR LRKSEVRFGR QNPSAGLSLV ARAGGMIVGS IKLDDSEIAI GEVPLTFIVD 120
  121 ADQWLLQGQA SCSVRSSDVL IVLPRDNSNV AGFDGQSRAV NVLGLKALPV KGCQDVTVTA 180
  181 NETYRIRTGR EQISIGRFAL NGKRASWVCH PDETFIGVPK VISTLPDIQS IDVTRYTC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits