YRC Public Data Repository - Protein Structure Prediction

Protein:	YJIN_ECOLI
Organism:	Escherichia coli
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJIN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|116608996, gi... - gi\|66963544\|ref\|ZP_00411116.1\| Protein of unknown function DUF445 [Arthrobacter sp. FB24], gi\|668712...	390.0	[0..3]	[419..39]
gi\|75235088, gi\|... - gi\|75235088\|ref\|ZP_00719344.1\| COG2733: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|218368286, gi... - gi\|218561517\|ref\|YP_002394430.1\| conserved hypothetical protein; putative inner membrane protein [Es...	389.0	[0..1]	[426..1]
gi\|188493079, gi... - gi\|75515523\|ref\|ZP_00737680.1\| COG2733: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|192930738, gi... - gi\|75258418\|ref\|ZP_00729849.1\| COG2733: Predicted membrane protein [Escherichia coli E22], gi\|193063...	389.0	[0..1]	[426..1]
gi\|41398897, gi\|... - gi\|41410064\|ref\|NP_962900.1\| hypothetical protein MAP3966 [Mycobacterium avium subsp. paratuberculos...	388.0	[0..3]	[419..40]
gi\|75212102, gi\|... - gi\|75212102\|ref\|ZP_00712142.1\| COG2733: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|194423250, gi... - gi\|83586638\|ref\|ZP_00925270.1\| COG2733: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|170518956, gi... - gi\|170681238\|ref\|YP_001746794.1\| hypothetical protein EcSMS35_4883 [Escherichia coli SMS-3-5], gi\|17...	388.0	[0..1]	[426..1]
gi\|75227779, gi\|... - gi\|75227779\|ref\|ZP_00714502.1\| COG2733: Predicted membrane protein [Escherichia coli B7A], gi\|191168... gi\|226901995, gi... - gi\|237704083\|ref\|ZP_04534564.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	387.0	[0..1]	[426..1]
gi\|91213994, gi\|... - gi\|91213994\|ref\|YP_543980.1\| hypothetical protein UTI89_C5046 [Escherichia coli UTI89], gi\|91075568\|...	387.0	[0..1]	[426..13]
gi\|187427643, gi... - gi\|75179398\|ref\|ZP_00699402.1\| COG2733: Predicted membrane protein [Shigella boydii BS512], gi\|18773... gi\|82546683, gi\|... - gi\|82546683\|ref\|YP_410630.1\| hypothetical protein SBO_4388 [Shigella boydii Sb227], gi\|81248094\|gb\|A... gi\|218354913, gi... - gi\|218698181\|ref\|YP_002405848.1\| conserved hypothetical protein; putative inner membrane protein [Es...	387.0	[0..1]	[426..1]
gi\|191170706, gi... - gi\|75242229\|ref\|ZP_00725991.1\| COG2733: Predicted membrane protein [Escherichia coli F11], gi\|191170... gi\|110346371, gi... - gi\|110644779\|ref\|YP_672509.1\| hypothetical protein ECP_4672 [Escherichia coli 536], gi\|110346371\|gb\|...	386.0	[0..1]	[426..1]
gi\|110818629, gi... - gi\|111019099\|ref\|YP_702071.1\| hypothetical protein RHA1_ro02106 [Rhodococcus jostii RHA1], gi\|110818...	386.0	[0..3]	[419..55]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIELRRA KRLALSLLLI AAATFVVTLF LPPNFWVSGV KAIAEAAMVG ALADWFAVVA  60
   61 LFRRVPIPII SRHTAIIPRN KDRIGENLGQ FVQEKFLDTQ SLVALIRRHE PALLIGNWFS 120
  121 QPE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NARRVGQHLL QIMSGFLELT DDARIQRLLK RAVHRAIDKV DLSGTSALML ESMTKNDRHQ  60
   61 VLLDTLIAQL IALLQRDKSR KFIAQQIVRW LESEHPLKAK ILPTEWLGEH SAELVSDAVN 120
  121 SLLDDISRDR AHQIRHAFDR ATFALIDKLK NDPEMAARAD AVKSYLKEDE AFNRYLSELW 180
  181 GDLREWLKVD INSEDSRVKE RIARAGQWFG ETLIADDALR ASLNGHLEQA AHRVAPEFSA 240
  241 FLTRHISDTV KSWDARDMSR QIELNIGKDL QFIRVNGTLV GGCIGLILYL LSQLPALFPL 300
  301 GNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits