YRC Public Data Repository - Protein Structure Prediction

Protein:	YJHP_ECOLI
Organism:	Escherichia coli
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJHP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|57020435, gi\|... - gi\|57168061\|ref\|ZP_00367200.1\| cyclopropane fatty acid synthase (cfa) [Campylobacter coli RM2228], g...	195.0	[0..1]	[246..124]
gi\|57505420, gi\|... - gi\|57505420\|ref\|ZP_00371348.1\| cyclopropane fatty acid synthase (cfa) [Campylobacter upsaliensis RM3...	195.0	[0..1]	[246..124]
gi\|57166859, gi\|... - gi\|57238055\|ref\|YP_179304.1\| cyclopropane-fatty-acyl-phospholipid synthase, putative [Campylobacter ... gi\|88596339, gi\|... - gi\|88596339\|ref\|ZP_01099576.1\| cyclopropane-fatty-acyl-phospholipid synthase, putative [Campylobacte...	194.0	[0..1]	[246..124]
gi\|86150286, gi\|... - gi\|86150286\|ref\|ZP_01068512.1\| cyclopropane-fatty-acyl-phospholipid synthase, putative [Campylobacte... gi\|153951326, gi... - gi\|153951326\|ref\|YP_001397721.1\| cyclopropane-fatty-acyl-phospholipid synthase, putative [Campylobac...	193.0	[0..1]	[246..124]
gi\|148926188, gi... - gi\|148926188\|ref\|ZP_01809873.1\| putative cyclopropane-fatty-acyl-phospholipid synthase [Campylobacte... gi\|109690379 - gi\|109690379\|ref\|ZP_01377456.1\| hypothetical protein Cjejd_01001868 [Campylobacter jejuni subsp. doy...	193.0	[0..1]	[246..128]
gi\|11277873 - pir\|\|A81324 cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) Cj1183c [similarity] - Campy... gi\|15792507, gi\|... - gi\|6968616\|emb\|CAB73437.1\| putative cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jej...	193.0	[0..1]	[246..124]
gi\|86150875, gi\|... - gi\|86150875\|ref\|ZP_01069091.1\| putative cyclopropane-fatty-acyl-phospholipid synthase protein [Campy...	193.0	[0..1]	[246..124]
gi\|86152995, gi\|... - gi\|86152995\|ref\|ZP_01071200.1\| cyclopropane fatty acid synthase [Campylobacter jejuni subsp. jejuni ...	193.0	[0..1]	[246..124]
gi\|87305772, gi\|... - gi\|87305772\|ref\|ZP_01087925.1\| cyclopocyclopropane fatty acid synthase [Campylobacter jejuni subsp. ...	192.0	[0..1]	[246..124]
gi\|107837176, gi... - gi\|108563403\|ref\|YP_627719.1\| cyclopropane fatty acid synthase [Helicobacter pylori HPAG1], gi\|10783...	189.0	[0..1]	[246..124]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPRIFTIS ESEHRIHNPF TEEKYATLGR VLRMKPGTRI LDLGSGSGEM LCTWARDHGI  60
   61 TGTGIDMSSL FTAQAKRRAE ELGVSERVHF IHNDAAGYVA NEKCDVAACV GATWIAGGFA 120
  121 GAEELLAQSL KPGGIMLIGE PYWRQLPATE EIAQACGVSS TSDFLTLPGL VGAFDDLGYD 180
  181 VVEMVLADQE GWDRYEAAKW LTMRRWLEAN PDDDFAAEVR AELNIAPKRY VTYARECFGW 240
  241 GVFALIAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	1nkvA
Description:	Hypothetical Protein Yjhp
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	0.569065423404044	bayes_pls_golite062009
catalytic activity	0.486907672100804	bayes_pls_golite062009
methyltransferase activity	0.155495931533276	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.145822362574272	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: