YRC Public Data Repository - Protein Structure Prediction

Protein:	YJGA_ECOLI
Organism:	Escherichia coli
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJGA_ECOLI.

Description	E-value	Query Range	Subject Range
Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis GN=YPTB3542 PE=3 SV=1 Y489_YERPY - UPF0307 protein YPK_0489 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_0489 PE=3... Y3728_YERPB - UPF0307 protein YPTS_3728 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3728 PE=... Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3542 PE=3... Y425_YERP3 - UPF0307 protein YpsIP31758_0425 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp...	237.0	[0..1]	[182..1]
gi\|22124092, gi\|... - gi\|22124092\|ref\|NP_667515.1\| hypothetical protein y0172 [Yersinia pestis KIM], gi\|21956842\|gb\|AAM837... gi\|45438453, gi\|... - gi\|45443583\|ref\|NP_995122.1\| hypothetical protein YP_3853 [Yersinia pestis biovar Microtus str. 9100...	237.0	[0..1]	[182..3]
gi\|77958836, gi\|... - gi\|77958836\|ref\|ZP_00822863.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia berc...	236.0	[0..1]	[182..1]
Y298_YERPP - UPF0307 protein YPDSF_0298 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0298 PE=3 SV=1 gi\|167049968, gi... - gi\|167400600\|ref\|ZP_02306109.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166212228, gi... - gi\|166212228\|ref\|ZP_02238263.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167426747, gi... - gi\|167426747\|ref\|ZP_02318500.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420564, gi... - gi\|167420564\|ref\|ZP_02312317.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y3481_YERPN - UPF0307 protein YPN_3481 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_3481 PE=3 SV=1 gi\|167466803 - gi\|167466803\|ref\|ZP_02331507.1\| hypothetical protein YpesF_02665 [Yersinia pestis FV-1] Y3704_YERPA - UPF0307 protein YPA_3704 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_3704 PE=3 SV=1 gi\|165937496, gi... - gi\|89105409\|ref\|ZP_01177929.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|229705786, gi... - gi\|229836843\|ref\|ZP_04457008.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229705786\|gb\|EEO... gi\|229695625, gi... - gi\|229839259\|ref\|ZP_04459418.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229899823, gi... - gi\|229899823\|ref\|ZP_04514964.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165989748, gi... - gi\|166011364\|ref\|ZP_02232262.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149289011, gi... - gi\|153997374\|ref\|ZP_02022474.1\| hypothetical protein YPE_3823 [Yersinia pestis CA88-4125], gi\|149289... gi\|165928288, gi... - gi\|165928288\|ref\|ZP_02224120.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|15981609, gi\|... - gi\|218930698\|ref\|YP_002348573.1\| hypothetical protein YPO3691 [Yersinia pestis CO92], gi\|16123830\|re... Y3691_YERPE - UPF0307 protein YPO3691/y0172/YP_3853 OS=Yersinia pestis GN=YPO3691 PE=3 SV=1 Y1170_YERPG - UPF0307 protein YpAngola_A1170 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1170 PE=3...	235.0	[0..1]	[182..1]
YJGA_SHIDS - UPF0307 protein YjgA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yjgA PE=3 SV=1	234.0	[0..1]	[183..1]
gi\|77973442, gi\|... - gi\|77973442\|ref\|ZP_00828990.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia fred...	233.0	[0..1]	[182..1]
gi\|238797947, gi... - gi\|77959993\|ref\|ZP_00823898.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia moll...	232.0	[0..1]	[182..1]
YJGA_SALPA - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yjgA PE=3 SV=1 YJGA_SALPA - UPF0307 protein yjgA OS=Salmonella paratyphi A GN=yjgA PE=3 SV=1 YJGA_SALPK - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain AKU_12601) GN=yjgA PE=3 SV=1	231.0	[0..1]	[183..1]
YJGA_SHIF8 - UPF0307 protein YjgA OS=Shigella flexneri serotype 5b (strain 8401) GN=yjgA PE=3 SV=1 gi\|30043742, gi\|... - gi\|30065478\|ref\|NP_839649.1\| hypothetical protein S4518 [Shigella flexneri 2a str. 2457T], gi\|300437...	230.0	[0..1]	[183..1]
gi\|238910593 - gi\|238910593\|ref\|ZP_04654430.1\| hypothetical protein SentesTe_05573 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=yjgA] [protein=hypothetical protein] [protein_id=YP_005240758.1] [location=complement(4694012.... YJGA_SALTY - UPF0307 protein yjgA OS=Salmonella typhimurium GN=yjgA PE=3 SV=1 gi\|168464691, gi... - gi\|195632785\|gb\|EDX51239.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Newport str. S... YJGA_SALPB - UPF0307 protein YjgA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yjgA PE=3 SV=1 gi\|205342218, gi... - gi\|205342218\|gb\|EDZ28982.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Weltevreden st... YJGA_SALNS - UPF0307 protein YjgA OS=Salmonella newport (strain SL254) GN=yjgA PE=3 SV=1 YJGA_SALHS - UPF0307 protein YjgA OS=Salmonella heidelberg (strain SL476) GN=yjgA PE=3 SV=1 gi\|205332935, gi... - gi\|205332935\|gb\|EDZ19699.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197291781, gi... - gi\|197291781\|gb\|EDY31131.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|168244083, gi... - gi\|205337042\|gb\|EDZ23806.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168262525, gi... - gi\|205348916\|gb\|EDZ35547.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|167551314, gi... - gi\|205323825\|gb\|EDZ11664.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205330259, gi... - gi\|205330259\|gb\|EDZ17023.1\| YjgA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... YJGA_SALCH - UPF0307 protein YjgA OS=Salmonella choleraesuis (strain SC-B67) GN=yjgA PE=3 SV=1 gi\|213649723 - gi\|213649723\|ref\|ZP_03379776.1\| hypothetical protein SentesTy_21995 [Salmonella enterica subsp. ente... gi\|213865365 - gi\|213865365\|ref\|ZP_03387484.1\| hypothetical protein SentesT_36758 [Salmonella enterica subsp. enter... gi\|213975325 - gi\|213975325\|ref\|ZP_03402584.1\| hypothetical protein Salmonellaentericaenterica_12478 [Salmonella en... gi\|214002801 - gi\|214002801\|ref\|ZP_03413536.1\| hypothetical protein Salmonellentericaenterica_21791 [Salmonella ent... YJGA_SALCH - UPF0307 protein yjgA OS=Salmonella choleraesuis GN=yjgA PE=3 SV=1 gi\|213163169 - gi\|213163169\|ref\|ZP_03348879.1\| hypothetical protein Salmoneentericaenterica_25343 [Salmonella enter... gi\|213423497 - gi\|213423497\|ref\|ZP_03356478.1\| hypothetical protein Salmonentericaenterica_38967 [Salmonella enteri... gi\|213427677 - gi\|213427677\|ref\|ZP_03360427.1\| hypothetical protein SentesTyphi_20067 [Salmonella enterica subsp. e... gi\|213609588 - gi\|213609588\|ref\|ZP_03369414.1\| hypothetical protein SentesTyp_03235 [Salmonella enterica subsp. ent... YJGA_SALDC - UPF0307 protein YjgA OS=Salmonella dublin (strain CT_02021853) GN=yjgA PE=3 SV=1 gi\|204323747, gi... - gi\|204927082\|ref\|ZP_03218284.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Javiana st... YJGA_SALCH - UPF0307 protein yjgA OS=Salmonella choleraesuis GN=yjgA PE=3 SV=1 YJGA_SALEP - UPF0307 protein YjgA OS=Salmonella enteritidis PT4 (strain P125109) GN=yjgA PE=3 SV=1 gi\|213028266 - gi\|213028266\|ref\|ZP_03342713.1\| hypothetical protein Salmonelentericaenterica_40585 [Salmonella ente... gi\|194469005, gi... - gi\|194469005\|ref\|ZP_03074989.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Kentucky s... YJGA_SALSV - UPF0307 protein YjgA OS=Salmonella schwarzengrund (strain CVM19633) GN=yjgA PE=3 SV=1 YJGA_SALA4 - UPF0307 protein YjgA OS=Salmonella agona (strain SL483) GN=yjgA PE=3 SV=1 gi\|197240725, gi... - gi\|197262470\|ref\|ZP_03162544.1\| YjgA protein [Salmonella enterica subsp. enterica serovar Saintpaul ... YJGA_SALPB - UPF0307 protein yjgA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yjgA PE=3 SV=1 YJGA_SALTY - UPF0307 protein yjgA OS=Salmonella typhimurium GN=yjgA PE=3 SV=1 YJGA_SALTI - UPF0307 protein yjgA OS=Salmonella typhi GN=yjgA PE=3 SV=1 YJGA_SALTY - UPF0307 protein YjgA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjgA PE=3 SV... YJGA_SALTI - UPF0307 protein YjgA OS=Salmonella typhi GN=yjgA PE=3 SV=1 gi\|16763237 - gi\|16763237\|ref\|NP_458854.1\| hypothetical protein STY4776 [Salmonella enterica subsp. enterica serov... YJGA_SALPC - UPF0307 protein YjgA OS=Salmonella paratyphi C (strain RKS4594) GN=yjgA PE=3 SV=1 gi\|29140355, gi\|... - gi\|29144716\|ref\|NP_808058.1\| hypothetical protein t4471 [Salmonella enterica subsp. enterica serovar...	230.0	[0..1]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG KNALDKIPLD  60
   61 ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA LDKLKNRHNQ QVVLFHKLEN 120
  121 LRDRLIDQGD DAIAEVLNLW PDADRQQLRT LIRNAKKEKE GNKPPKSARQ IFQYLRELAE 180
  181 NEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	2p0tA
Description:	No description for 2p0tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits