YRC Public Data Repository - Protein Structure Prediction

Protein:	YJFP_ECOLI
Organism:	Escherichia coli
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJFP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89095982, gi\|... - gi\|89095982\|ref\|ZP_01168875.1\| prolyl oligopeptidase family protein [Bacillus sp. NRRL B-14911], gi\|...	181.0	[0..1]	[248..343]
gi\|46399500, gi\|... - gi\|46445859\|ref\|YP_007224.1\| hypothetical protein pc0225 [Candidatus Protochlamydia amoebophila UWE2...	180.0	[0..2]	[249..379]
gi\|34496725, gi\|... - gi\|34496725\|ref\|NP_900940.1\| dipeptidyl anminopeptidase [Chromobacterium violaceum ATCC 12472], gi\|3...	179.0	[0..2]	[249..380]
gi\|241883118, gi... - gi\|241904522\|ref\|ZP_04789212.1\| peptidase S9 prolyl oligopeptidase active site domain protein [Therm... gi\|242256706, gi... - gi\|242256706\|ref\|ZP_04801592.1\| peptidase S9 prolyl oligopeptidase active site domain protein [Therm... gi\|166855204, gi... - gi\|167040964\|ref\|YP_001663949.1\| peptidase S9 prolyl oligopeptidase [Thermoanaerobacter sp. X514], g... gi\|76587952, gi\|... - gi\|76796669\|ref\|ZP_00779025.1\| Peptidase S9, prolyl oligopeptidase active site region [Thermoanaerob...	178.0	[0..3]	[248..350]
gi\|115378689, gi... - gi\|115378689\|ref\|ZP_01465838.1\| peptidase S9, prolyl oligopeptidase active site region [Stigmatella ...	177.0	[0..2]	[249..338]
gi\|186463864, gi... - gi\|23125262\|ref\|ZP_00107203.1\| COG1506: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Nostoc ...	177.0	[0..2]	[249..358]
gi\|22776762, gi\|... - gi\|23098536\|ref\|NP_692002.1\| acylaminoacyl-peptidase [Oceanobacillus iheyensis HTE831], gi\|22776762\|...	176.0	[0..2]	[249..414]
gi\|94968957, gi\|... - gi\|94968957\|ref\|YP_591005.1\| peptidase S9, prolyl oligopeptidase [Candidatus Koribacter versatilis E...	176.0	[0..2]	[249..377]
gi\|77360885, gi\|... - gi\|77360885\|ref\|YP_340460.1\| peptidase [Pseudoalteromonas haloplanktis TAC125], gi\|76875796\|emb\|CAI8...	174.0	[0..2]	[249..390]
gi\|113475705, gi... - gi\|71674368\|ref\|ZP_00672115.1\| Peptidase S9, prolyl oligopeptidase active site region [Trichodesmium...	174.0	[0..2]	[249..361]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIESRELA DIPVLHAYPV GQKDTPLPCV IFYHGFTSSS LVYSYFAVAL AQAGLRVIMP  60
   61 DAPDHGSRFS GDAARRLNQF WQILLQSMQE FTTLRAAIAE ENWLLDDRLA VGGASMGAMT 120
  121 ALGITARHPT VRCTASMMGS GYFTSLARSL FPPLIPETAA QQNEFNNIVA PLAEWEATNH 180
  181 LEQLSDRPLL LWHGLDDDVV PADESLRLQQ ALSETGRDKL LTCSWQPGVR HRITPEALDA 240
  241 AVTFFRQHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2bklA
Description:	Structural and Mechanistic Analysis of Two Prolyl Endopeptidsases: Role of Inter-Domain Dynamics in Catalysis and Specificity
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits