YRC Public Data Repository - Protein Structure Prediction

Protein:	YJFL_ECOLI
Organism:	Escherichia coli
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJFL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115515654, gi... - gi\|117626530\|ref\|YP_859853.1\| hypothetical protein APECO1_2208 [Escherichia coli APEC O1], gi\|115515...	151.0	[0..1]	[132..28]
gi\|62182819, gi\|... - gi\|62182819\|ref\|YP_219236.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|224586213, gi... - gi\|224586213\|ref\|YP_002640012.1\| hypothetical protein SPC_4521 [Salmonella enterica subsp. enterica ... gi\|197251282, gi... - gi\|197251282\|ref\|YP_002149287.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|238910532 - gi\|238910532\|ref\|ZP_04654369.1\| hypothetical protein SentesTe_05268 [Salmonella enterica subsp. ente... gi\|194458832, gi... - gi\|194472468\|ref\|ZP_03078452.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|168822497, gi... - gi\|205341065\|gb\|EDZ27829.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|205334264, gi... - gi\|205334264\|gb\|EDZ21028.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar...	147.0	[0..1]	[132..1]
gi\|207859519, gi... - gi\|207859519\|ref\|YP_002246170.1\| hypothetical protein SEN4140 [Salmonella enterica subsp. enterica s... gi\|197939971, gi... - gi\|198245455\|ref\|YP_002218257.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|200388308, gi... - gi\|200388308\|ref\|ZP_03214920.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|197263344, gi... - gi\|197263344\|ref\|ZP_03163418.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|197365089, gi... - gi\|197365089\|ref\|YP_002144726.1\| hypothetical protein SSPA3890 [Salmonella enterica subsp. enterica ... gi\|194446450, gi... - gi\|194446450\|ref\|YP_002043628.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|194408494, gi... - gi\|194450190\|ref\|YP_002048416.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|205347877, gi... - gi\|205347877\|gb\|EDZ34508.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|168464742, gi... - gi\|195632878\|gb\|EDX51332.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|205327238, gi... - gi\|205327238\|gb\|EDZ14002.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|168245162, gi... - gi\|205336064\|gb\|EDZ22828.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|161617645, gi... - gi\|161617645\|ref\|YP_001591610.1\| hypothetical protein SPAB_05508 [Salmonella enterica subsp. enteric... gi\|167553778, gi... - gi\|205321869\|gb\|EDZ09708.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|16422935, gi\|... - gi\|16767620\|ref\|NP_463235.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164229... lcl\|NC_016856.1_... - [gene=yjfL] [protein=putative inner membrane protein] [protein_id=YP_005240687.1] [location=4630147.... gi\|56130422, gi\|... - gi\|56416165\|ref\|YP_153240.1\| hypothetical protein SPA4191 [Salmonella enterica subsp. enterica serov...	146.0	[0..1]	[132..1]
gi\|49613067, gi\|... - gi\|50122541\|ref\|YP_051708.1\| hypothetical protein ECA3620 [Pectobacterium atrosepticum SCRI1043], gi...	146.0	[0..1]	[132..1]
gi\|213648982 - gi\|213648982\|ref\|ZP_03379035.1\| hypothetical protein SentesTy_17893 [Salmonella enterica subsp. ente... gi\|213852971 - gi\|213852971\|ref\|ZP_03382503.1\| hypothetical protein SentesT_08961 [Salmonella enterica subsp. enter... gi\|213428659 - gi\|213428659\|ref\|ZP_03361409.1\| hypothetical protein SentesTyphi_25916 [Salmonella enterica subsp. e... gi\|213612326 - gi\|213612326\|ref\|ZP_03370152.1\| hypothetical protein SentesTyp_07374 [Salmonella enterica subsp. ent... gi\|25512862, gi\|... - gi\|25512862\|pir\|\|AF1050 probable membrane protein yjfL [imported] - Salmonella enterica subsp. enter... gi\|16763191 - gi\|16763191\|ref\|NP_458808.1\| hypothetical protein STY4730 [Salmonella enterica subsp. enterica serov... gi\|29144670, gi\|... - gi\|29144670\|ref\|NP_808012.1\| hypothetical protein t4425 [Salmonella enterica subsp. enterica serovar...	146.0	[0..1]	[132..1]
gi\|227836346, gi... - gi\|227886773\|ref\|ZP_04004578.1\| inner membrane protein [Escherichia coli 83972], gi\|227836346\|gb\|EEJ... gi\|226901763, gi... - gi\|237703851\|ref\|ZP_04534332.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|215489528, gi... - gi\|215489528\|ref\|YP_002331959.1\| conserved inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|218368112, gi... - gi\|218561343\|ref\|YP_002394256.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218692518, gi... - gi\|218692518\|ref\|YP_002400730.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|91075307, gi\|... - gi\|91213733\|ref\|YP_543719.1\| hypothetical protein UTI89_C4784 [Escherichia coli UTI89], gi\|91075307\|... gi\|110644541, gi... - gi\|110644541\|ref\|YP_672271.1\| putative membrane protein YjfL [Escherichia coli 536], gi\|110346133\|gb...	143.0	[0..1]	[132..1]
gi\|81247985, gi\|... - gi\|82546574\|ref\|YP_410521.1\| hypothetical protein SBO_4271 [Shigella boydii Sb227], gi\|81247985\|gb\|A... gi\|187730281, gi... - gi\|75179447\|ref\|ZP_00699451.1\| COG3766: Predicted membrane protein [Shigella boydii BS512], gi\|18773...	143.0	[0..1]	[132..1]
gi\|190909088, gi... - gi\|75242426\|ref\|ZP_00726188.1\| COG3766: Predicted membrane protein [Escherichia coli F11], gi\|191170...	141.0	[0..1]	[132..1]
gi\|75854157, gi\|... - gi\|75854157\|ref\|ZP_00761869.1\| COG3766: Predicted membrane protein [Vibrio sp. Ex25], gi\|116184089\|r...	136.0	[0..4]	[132..8]
gi\|36787579, gi\|... - gi\|37528142\|ref\|NP_931487.1\| hypothetical protein plu4311 [Photorhabdus luminescens subsp. laumondii...	135.0	[0..2]	[132..13]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHILDSLLAF SAYFFIGVAM VIIFLFIYSK ITPHNEWQLI KNNNTAASLA FSGTLLGYVI  60
   61 PLSSAAINAV SIPDYFAWGG IAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.79588
Match:	PF03994.5
Description:	No description for PF03994.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIQLLVFAGV RLYMPALSEK IINHNTAAGM FMGTAALAGG IFNAACMTW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.79588
Match:	PF03994.5
Description:	No description for PF03994.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits