YRC Public Data Repository - Protein Structure Prediction

Protein:	YJDC_ECOLI
Organism:	Escherichia coli
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJDC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115585350, gi... - gi\|32042298\|ref\|ZP_00139881.1\| COG1309: Transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14...	116.0	[0..2]	[180..8]
gi\|11352079 - pir\|\|A83371 probable transcription regulator PA2196 [imported] - Pseudomonas aeruginosa (strain PAO1... gi\|218891851, gi... - gi\|218891851\|ref\|YP_002440718.1\| putative transcriptional regulator [Pseudomonas aeruginosa LESB58],... gi\|254235223, gi... - gi\|84321076\|ref\|ZP_00969439.1\| COG1309: Transcriptional regulator [Pseudomonas aeruginosa C3719], gi... gi\|126193996, gi... - gi\|84327489\|ref\|ZP_00975508.1\| COG1309: Transcriptional regulator [Pseudomonas aeruginosa 2192], gi\|... gi\|9948218, gi\|1... - gi\|9948218\|gb\|AAG05584.1\|AE004646_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]... gi\|107101623 - gi\|107101623\|ref\|ZP_01365541.1\| hypothetical protein PaerPA_01002667 [Pseudomonas aeruginosa PACS2]	116.0	[0..2]	[180..8]
gi\|71838703, gi\|... - gi\|71838703\|ref\|ZP_00678460.1\| regulatory protein, TetR [Pelobacter propionicus DSM 2379], gi\|717407...	113.0	[0..2]	[181..25]
gi\|68344924, gi\|... - gi\|70730625\|ref\|YP_260366.1\| TetR family transcriptional regulator [Pseudomonas fluorescens Pf-5], g...	111.0	[0..2]	[180..9]
gi\|28202287, gi\|... - gi\|28209852\|ref\|NP_780796.1\| TetR family transcriptional regulator [Clostridium tetani E88], gi\|2820...	111.0	[0..2]	[180..4]
gi\|114307450, gi... - gi\|71551162\|ref\|ZP_00671156.1\| regulatory protein, TetR [Nitrosomonas eutropha C71], gi\|71483730\|gb\|...	111.0	[0..4]	[180..9]
gi\|24984038, gi\|... - gi\|26989198\|ref\|NP_744623.1\| TetR family transcriptional regulator [Pseudomonas putida KT2440], gi\|2...	110.0	[0..2]	[179..8]
gi\|77970341, gi\|... - gi\|78062456\|ref\|YP_372364.1\| TetR family transcriptional regulator [Burkholderia sp. 383], gi\|779703...	110.0	[0..3]	[179..10]
gi\|152988824, gi... - gi\|94413391\|ref\|ZP_01293276.1\| hypothetical protein PaerP_01004796 [Pseudomonas aeruginosa PA7], gi\|...	110.0	[0..2]	[181..8]
gi\|56709204, gi\|... - gi\|56709204\|ref\|YP_165250.1\| TetR family transcriptional regulator [Ruegeria pomeroyi DSS-3], gi\|566...	110.0	[0..2]	[183..5]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQREDVLGEA LKLLELQGIA NTTLEMVAER VDYPLDELRR FWPDKEAILY DALRYLSQQI  60
   61 DVWRRQLMLD ETQTAEQKLL ARYQALSECV KNNRYPGCLF IAACTFYPDP GHPIHQLADQ 120
  121 QKSAAYDFTH ELLTTLEVDD PAMVAKQMEL VLEGCLSRML VNRSQADVDT AHRLAEDILR 180
  181 FARCRQGGAL T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	2eh3A
Description:	No description for 2eh3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits