YRC Public Data Repository - Protein Structure Prediction

Protein:	YJCH_ECOLI
Organism:	Escherichia coli
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJCH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77381837, gi\|... - gi\|77457834\|ref\|YP_347339.1\| hypothetical protein Pfl01_1607 [Pseudomonas fluorescens Pf0-1], gi\|773...	150.0	[0..1]	[102..1]
gi\|95109624 - gi\|95109624\|emb\|CAK14325.1\| conserved hypothetical protein [Pseudomonas entomophila L48] gi\|104780637, gi... - gi\|95109624\|emb\|CAK14325.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047806...	148.0	[0..1]	[102..1]
tr\|I7B9N5\|I7B9N5... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_2255 PE=4 SV=1 gi\|82714030, gi\|... - gi\|82738923\|ref\|ZP_00901744.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714030\|g...	146.0	[0..1]	[102..1]
gi\|26988473, gi\|... - gi\|26988473\|ref\|NP_743898.1\| hypothetical protein PP_1742 [Pseudomonas putida KT2440], gi\|24983235\|g...	146.0	[0..1]	[102..1]
gi\|34498735, gi\|... - gi\|34498735\|ref\|NP_902950.1\| hypothetical protein CV_3280 [Chromobacterium violaceum ATCC 12472], gi...	145.0	[0..1]	[102..74]
gi\|70729101, gi\|... - gi\|70729101\|ref\|YP_258837.1\| hypothetical protein PFL_1711 [Pseudomonas fluorescens Pf-5], gi\|683434...	141.0	[0..1]	[102..1]
gi\|94414412, gi\|... - gi\|94414412\|ref\|ZP_01294273.1\| hypothetical protein PaerP_01003846 [Pseudomonas aeruginosa PA7], gi\|...	141.0	[0..1]	[102..1]
gi\|49074754 - gi\|49074754\|gb\|AAT49426.1\| PA3235 [synthetic construct]	140.0	[0..1]	[102..1]
gi\|77956769, gi\|... - gi\|77956769\|ref\|ZP_00820848.1\| COG3162: Predicted membrane protein [Yersinia bercovieri ATCC 43970],... gi\|238720110, gi... - gi\|77962487\|ref\|ZP_00826306.1\| COG3162: Predicted membrane protein [Yersinia mollaretii ATCC 43969],...	140.0	[0..1]	[102..1]
gi\|77973299, gi\|... - gi\|77973299\|ref\|ZP_00828848.1\| COG3162: Predicted membrane protein [Yersinia frederiksenii ATCC 3364...	140.0	[0..1]	[102..1]

Back

Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTIYQRIE DNAHFRELVE KRQRFATILS IIMLAVYIGF ILLIAFAPGW LGTPLNPNTS  60
   61 VTRGIPIGVG VIVISFVLTG IYIWRANGEF DRLNNEVLHE VQAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.075721
Match:	PF04341.3
Description:	No description for PF04341.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits