YRC Public Data Repository - Protein Structure Prediction

Protein:	YJCD_ECOLI
Organism:	Escherichia coli
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	233.0	[0..11]	[445..138]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	222.0	[0..10]	[445..18]
gi\|46912456, gi\|... - gi\|54308030\|ref\|YP_129050.1\| putative xanthine/uracil permease family protein [Photobacterium profun...	222.0	[0..5]	[445..45]
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	220.0	[0..3]	[445..48]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	219.0	[0..3]	[445..48]
gi\|16504783, gi\|... - gi\|25309459\|pir\|\|AH0956 probable membrane transport protein STY3932 [imported] - Salmonella enterica... gi\|29143966, gi\|... - gi\|29143966\|ref\|NP_807308.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|16762478 - gi\|16762478\|ref\|NP_458095.1\| putative membrane transport protein [Salmonella enterica subsp. enteric...	219.0	[0..3]	[445..48]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	219.0	[0..2]	[445..14]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	219.0	[0..4]	[445..21]
gi\|153837736, gi... - gi\|153837736\|ref\|ZP_01990403.1\| guanine-hypoxanthine permease [Vibrio parahaemolyticus AQ3810], gi\|1... gi\|28805658, gi\|... - gi\|28897446\|ref\|NP_797051.1\| hypothetical protein VP0672 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28805658 - gi\|28805658\|dbj\|BAC58935.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	218.0	[0..11]	[446..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPSARTGG SLDAWFKISQ RGSTVRQEVV AGLTTFLAMV YSVIVVPGML GKAGFPPAAV  60
   61 FVATCLVAGL GSIVMGLWAN LPLAIGCAIS LTAFTAFSLV LGQHISVPVA LGAVFLMGVL 120
  121 FTVISATGIR SWILRNLPHG VAHGTGIGIG LFLLLIAANG VGLVIKNPLD GLPVALGDFA 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFPVIMSLVG LAVIIGLEKL KVPGGILLTI IGISIVGLIF DPNVHFSGVF AMPSLSDENG  60
   61 NSLIGSLDIM GALNPVVLPS VLALVMTAVF DATGTIRAVA GQANLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [287-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKDGQIIDGG KALTTDSMSS VFSGLVGAAP AAVYIESAAG TAAGGKTGLT AITVGVLFLL  60
   61 ILFLSPLSYL VPGYATAPAL MYVGLLMLSN VAKIDFADFV DAMAGLVTAV FIVLTCNIVT 120
  121 GIMIGFATLV IGRLVSGEWR KLNIGTVVIA VALVTFYAGG WAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits