YRC Public Data Repository - Protein Structure Prediction

Protein:	YJBQ_ECOLI
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJBQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37199911, gi\|... - gi\|37681160\|ref\|NP_935769.1\| hypothetical protein VV2976 [Vibrio vulnificus YJ016], gi\|37199911\|dbj\|...	214.0	[0..1]	[138..1]
gi\|87286513, gi\|... - gi\|87310756\|ref\|ZP_01092883.1\| hypothetical protein DSM3645_07006 [Blastopirellula marina DSM 3645],...	213.0	[0..2]	[138..3]
gi\|49613135, gi\|... - gi\|50122609\|ref\|YP_051776.1\| hypothetical protein ECA3688 [Pectobacterium atrosepticum SCRI1043], gi...	213.0	[0..1]	[138..1]
gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858... gi\|86142773, gi\|... - gi\|86142773\|ref\|ZP_01061212.1\| hypothetical protein MED217_07656 [Flavobacterium sp. MED217], gi\|858...	213.0	[0..2]	[138..3]
gi\|27364789, gi\|... - gi\|27364789\|ref\|NP_760317.1\| hypothetical protein VV1_1395 [Vibrio vulnificus CMCP6], gi\|27360934\|gb...	212.0	[0..1]	[138..1]
gi\|75854365, gi\|... - gi\|75854365\|ref\|ZP_00762063.1\| COG0432: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	211.0	[0..1]	[138..1]
gi\|91227269, gi\|... - gi\|91227269\|ref\|ZP_01261694.1\| hypothetical protein V12G01_14670 [Vibrio alginolyticus 12G01], gi\|91...	211.0	[0..1]	[138..1]
gi\|87120833, gi\|... - gi\|87120833\|ref\|ZP_01076726.1\| hypothetical protein MED121_18870 [Marinomonas sp. MED121], gi\|861640...	209.0	[0..1]	[138..1]
gi\|121590960, gi... - gi\|121590960\|ref\|ZP_01678280.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215471... gi\|124114175, gi... - gi\|153216664\|ref\|ZP_01950571.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114175\|... gi\|124117582, gi... - gi\|153224533\|ref\|ZP_01954491.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241175... gi\|116187944, gi... - gi\|75828930\|ref\|ZP_00758258.1\| COG0432: Uncharacterized conserved protein [Vibrio cholerae MO10], gi... gi\|153803240, gi... - gi\|153803240\|ref\|ZP_01957826.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121220... gi\|229354374, gi... - gi\|229508606\|ref\|ZP_04398102.1\| hypothetical protein VCE_000014 [Vibrio cholerae B33], gi\|229354374\|... gi\|153830462, gi... - gi\|153830462\|ref\|ZP_01983129.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887406... gi\|229606346, gi... - gi\|229606346\|ref\|YP_002876994.1\| hypothetical protein VCD_001251 [Vibrio cholerae MJ-1236], gi\|22936... gi\|9654791, gi\|1... - gi\|9654791\|gb\|AAF93546.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229346921, gi... - gi\|229516018\|ref\|ZP_04405469.1\| hypothetical protein VCC_000033 [Vibrio cholerae RC9], gi\|229346921\|... gi\|11278573 - pir\|\|A82330 conserved hypothetical protein VC0373 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|229504956, gi... - gi\|229504956\|ref\|ZP_04394467.1\| hypothetical protein VCF_000164 [Vibrio cholerae BX 330286], gi\|2293... gi\|227008473, gi... - gi\|227080585\|ref\|YP_002809136.1\| hypothetical protein VCM66_0357 [Vibrio cholerae M66-2], gi\|2270084...	208.0	[0..1]	[138..1]
gi\|84376221, gi\|... - gi\|84393169\|ref\|ZP_00991933.1\| hypothetical protein V12B01_10815 [Vibrio splendidus 12B01], gi\|84376...	208.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWYQKTLTLS AKSRGFHLVT DEILNQLADM PRVNIGLLHL LLQHTSASLT LNENCDPTVR  60
   61 HDMERFFLRT VPDNGNYEHD YEGADDMPSH IKSSMLGTSL VLPVHKGRIQ TGTWQGIWLG 120
  121 EHRIHGGSRR IIATLQGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1vmjA
Description:	Crystal structure of hypothetical protein (TM0723) from Thermotoga maritima at 1.52 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits