YRC Public Data Repository - Protein Structure Prediction

Protein:	YJBJ_ECOLI
Organism:	Escherichia coli
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJBJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25502154 - gi\|25502154\|pir\|\|B95955 hypothetical protein with amino acid permeases signature SMb21330 [imported]... gi\|16264654, gi\|... - gi\|16264654\|ref\|NP_437446.1\| hypothetical protein with amino acid permeases signature [Sinorhizobium...	97.0	[0..1]	[69..15]
gi\|115519845, gi... - gi\|115525898\|ref\|YP_782809.1\| CsbD family protein [Rhodopseudomonas palustris BisA53], gi\|115519845\|...	93.0	[0..1]	[66..25]
gi\|47574292 - gi\|47574292\|ref\|ZP_00244328.1\| COG3237: Uncharacterized protein conserved in bacteria [Rubrivivax ge... gi\|124268094, gi... - gi\|124268094\|ref\|YP_001022098.1\| hypothetical protein Mpe_A2910 [Methylibium petroleiphilum PM1], gi...	92.0	[0..1]	[69..1]
gi\|111283350, gi... - gi\|111616424\|ref\|ZP_01403456.1\| CsbD-like [Acidovorax avenae subsp. citrulli AAC00-1], gi\|111283350\|...	90.0	[0..1]	[67..35]
gi\|84710201, gi\|... - gi\|84710201\|ref\|ZP_01019136.1\| similar to Uncharacterized protein conserved in bacteria [Polaromonas...	89.0	[0..1]	[69..21]
gi\|89351944, gi\|... - gi\|89359445\|ref\|ZP_01197266.1\| conserved hypothetical protein [Xanthobacter autotrophicus Py2], gi\|8...	89.0	[0..1]	[66..1]
Y5606_RHIME - UPF0337 protein RB0906 OS=Rhizobium meliloti (strain 1021) GN=RB0906 PE=3 SV=2 Y5606_RHIME - UPF0337 protein RB0906 OS=Rhizobium meliloti GN=RB0906 PE=3 SV=2	88.0	[0..1]	[69..1]
gi\|50119580, gi\|... - gi\|50119580\|ref\|YP_048747.1\| putative stress-response protein [Pectobacterium atrosepticum SCRI1043]...	88.0	[0..1]	[69..5]
gi\|91975854, gi\|... - gi\|91975854\|ref\|YP_568513.1\| CsbD-like [Rhodopseudomonas palustris BisB5], gi\|91682310\|gb\|ABE38612.1...	87.0	[0..1]	[66..1]
gi\|150376861, gi... - gi\|150376861\|ref\|YP_001313457.1\| CsbD family protein [Sinorhizobium medicae WSM419], gi\|150031408\|gb...	87.0	[0..1]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDEAGGNW KQFKGKVKEQ WGKLTDDDMT IIEGKRDQLV GKIQERYGYQ KDQAEKEVVD  60
   61 WETRNEYRW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1ywwA
Description:	NMR structure of P. aeruginosa protein PA4738: Northeast Structural Genomics Consortium target PaP2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits