YRC Public Data Repository - Protein Structure Prediction

Protein:	YIID_ECOLI
Organism:	Escherichia coli
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIID_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|197096280, gi... - gi\|197364803\|ref\|YP_002144440.1\| putative acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|56130131, gi\|... - gi\|56415874\|ref\|YP_152949.1\| putative acetyltransferase [Salmonella enterica subsp. enterica serovar...	328.0	[0..1]	[329..1]
gi\|74314390, gi\|... - gi\|74314390\|ref\|YP_312809.1\| putative acetyltransferase [Shigella sonnei Ss046], gi\|73857867\|gb\|AAZ9...	327.0	[0..1]	[329..1]
gi\|24054458, gi\|... - gi\|24115178\|ref\|NP_709688.1\| putative acetyltransferase [Shigella flexneri 2a str. 301], gi\|24054458... gi\|30064823, gi\|... - gi\|30064823\|ref\|NP_838994.1\| putative acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|300430...	326.0	[0..1]	[329..1]
gi\|29143893, gi\|... - gi\|29143893\|ref\|NP_807235.1\| putative acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|16762405 - gi\|16762405\|ref\|NP_458022.1\| putative acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|25364715, gi\|... - gi\|25364715\|pir\|\|AC0947 probable acetyltransferase STY3849 [imported] - Salmonella enterica subsp. e... gi\|16767294, gi\|... - gi\|16767294\|ref\|NP_462909.1\| putative acetyltransferase [Salmonella typhimurium LT2], gi\|16422592\|gb... gi\|62182489, gi\|... - gi\|62182489\|ref\|YP_218906.1\| putative acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205274172, gi... - gi\|205354391\|ref\|YP_002228192.1\| putative acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|205348128, gi... - gi\|205360623\|ref\|ZP_02685054.2\| acetyltransferase, gnat family [Salmonella enterica subsp. enterica ... gi\|206711022, gi... - gi\|207859219\|ref\|YP_002245870.1\| putative acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194444618, gi... - gi\|194444618\|ref\|YP_002043247.1\| acetyltransferase, gnat family [Salmonella enterica subsp. enterica... gi\|194736636, gi... - gi\|194736636\|ref\|YP_002116949.1\| acetyltransferase, gnat family [Salmonella enterica subsp. enterica... gi\|197214731, gi... - gi\|197251028\|ref\|YP_002148949.1\| acetyltransferase, gnat family [Salmonella enterica subsp. enterica... gi\|197300988, gi... - gi\|197300988\|ref\|ZP_02662703.2\| acetyltransferase, gnat family protein [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yiiD] [protein=putative acetyltransferase] [protein_id=YP_005240296.1] [location=4252229..4253... gi\|161617149, gi... - gi\|161617149\|ref\|YP_001591114.1\| putative acetyltransferase [Salmonella enterica subsp. enterica ser...	326.0	[0..1]	[329..1]
gi\|81243087, gi\|... - gi\|82778939\|ref\|YP_405288.1\| putative acetyltransferase [Shigella dysenteriae Sd197], gi\|81243087\|gb...	325.0	[0..1]	[329..1]
gi\|25364712 - gi\|25364712\|pir\|\|B86077 galactoside O-acetyltransferase (EC 2.3.1.18), probable yiiD [imported] - Es... gi\|12518774, gi\|... - gi\|15804474\|ref\|NP_290514.1\| putative acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|125187...	324.0	[0..1]	[329..1]
gi\|75176726, gi\|... - gi\|75176726\|ref\|ZP_00696854.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	312.0	[0..17]	[329..1]
gi\|215489216, gi... - gi\|215489216\|ref\|YP_002331647.1\| predicted acetyltransferase [Escherichia coli O127:H6 str. E2348/69... gi\|217320444, gi... - gi\|217324223\|ref\|ZP_03440307.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. TW1458... gi\|208741586, gi... - gi\|208821463\|ref\|ZP_03261783.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4042... tr\|A0A120MCQ0\|A0... - Uncharacterized protein OS=Escherichia coli (strain K12) GN=C3026_21015 PE=4 SV=1 gi\|209921362, gi... - gi\|209921362\|ref\|YP_002295446.1\| putative acetyltransferase [Escherichia coli SE11], gi\|209914621\|db... gi\|189378104, gi... - gi\|189378104\|gb\|EDU96520.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC508], gi... gi\|75513963, gi\|... - gi\|75513963\|ref\|ZP_00736316.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|169757028, gi... - gi\|170022100\|ref\|YP_001727054.1\| thioesterase domain-containing protein [Escherichia coli ATCC 8739]... gi\|75238329 - gi\|75238329\|ref\|ZP_00722328.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|168775290, gi... - gi\|187769213\|gb\|EDU33057.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4196], g... gi\|75237851 - gi\|75237851\|ref\|ZP_00721866.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|189001534, gi... - gi\|189001534\|gb\|EDU70520.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4076], g... gi\|191166423, gi... - gi\|75230409\|ref\|ZP_00716895.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|195937527 - gi\|195937527\|ref\|ZP_03082909.1\| acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|75197761, gi\|... - gi\|75197761\|ref\|ZP_00707831.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|208812271, gi... - gi\|208812271\|ref\|ZP_03253600.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4045... gi\|83586263 - gi\|83586263\|ref\|ZP_00924899.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|170680652, gi... - gi\|170680652\|ref\|YP_001746218.1\| acetyltransferase [Escherichia coli SMS-3-5], gi\|170518370\|gb\|ACB16... gi\|170769631, gi... - gi\|170769631\|ref\|ZP_02904084.1\| acetyltransferase, GNAT family [Escherichia albertii TW07627], gi\|17... gi\|168761740, gi... - gi\|189367847\|gb\|EDU86263.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4501], g... gi\|189362635, gi... - gi\|189362635\|gb\|EDU81054.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4486], g... gi\|188016806, gi... - gi\|188016806\|gb\|EDU54928.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4113], g... gi\|189357130, gi... - gi\|189357130\|gb\|EDU75549.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4401], g... gi\|253326520, gi... - gi\|253775476\|ref\|YP_003038307.1\| thioesterase domain protein [Escherichia coli BL21(DE3)], gi\|253326...	312.0	[0..17]	[329..1]
gi\|110616974, gi... - gi\|110807426\|ref\|YP_690946.1\| putative acetyltransferase [Shigella flexneri 5 str. 8401], gi\|1106169...	311.0	[0..17]	[329..1]
gi\|157078338, gi... - gi\|75188622\|ref\|ZP_00701889.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	311.0	[0..17]	[329..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLPGLSRE TRESIAMYHL RVPQTEEELE RYYQFRWEML RKPLHQPKGS ERDAWDAMAH  60
   61 HQMVVDEQGN LVAVGRLYIN ADNEASIRFM AVHPDVQDKG LGTLMAMTLE SVARQEGVKR 120
  121 VTCSAREDAV EFFAKLGFVN QGEITTPTTT PIRHFLMIKP VATLDDILHR GDWCAQLQQA 180
  181 WYEHIPLSEK MGVRIQQYTG QKFITTMPET GNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.09691
Match:	2hv2A
Description:	No description for 2hv2A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.97933499002461	bayes_pls_golite062009
transferase activity	1.65122603541695	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.42711272311757	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.24328242407788	bayes_pls_golite062009
acyltransferase activity	1.2338745976101	bayes_pls_golite062009
N-acyltransferase activity	0.890897647236405	bayes_pls_golite062009
acetyltransferase activity	0.823367673029436	bayes_pls_golite062009
N-acetyltransferase activity	0.498634717186713	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [214-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPHHTLFAGS LFSLATLTGW GLIWLMLRER HLGGTIILAD AHIRYSKPIS GKPHAVADLG  60
   61 ALSGDLDRLA RGRKARVQMQ VEIFGDETPG AVFEGTYIVL PAKPFGPYEE GGNEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1t82A
Description:	Crystal Structure of the putative thioesterase from Shewanella oneidensis, Northeast Structural Genomics Target SoR51
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.74605540351792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: