YRC Public Data Repository - Protein Structure Prediction

Protein:	YIHD_ECOLI
Organism:	Escherichia coli
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIHD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238726146, gi... - gi\|77976785\|ref\|ZP_00832256.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia inte...	167.0	[0..1]	[89..1]
gi\|238713476, gi... - gi\|77956896\|ref\|ZP_00820970.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia berc...	164.0	[0..1]	[89..1]
gi\|238797618, gi... - gi\|77960495\|ref\|ZP_00824364.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia moll...	164.0	[0..1]	[89..1]
gi\|145601129, gi... - gi\|145601129\|ref\|YP_001165205.1\| hypothetical protein YPDSF_3889 [Yersinia pestis Pestoides F], gi\|1... gi\|166205056, gi... - gi\|166213654\|ref\|ZP_02239689.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011492, gi... - gi\|166011492\|ref\|ZP_02232390.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419326, gi... - gi\|167419326\|ref\|ZP_02311079.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167048504, gi... - gi\|167402129\|ref\|ZP_02307606.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167470385 - gi\|167470385\|ref\|ZP_02335089.1\| hypothetical protein YpesF_21462 [Yersinia pestis FV-1] gi\|89102780, gi\|... - gi\|89102780\|ref\|ZP_01175390.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|167053963, gi... - gi\|167427036\|ref\|ZP_02318789.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|108809519, gi... - gi\|108809519\|ref\|YP_653435.1\| hypothetical protein YPA_3528 [Yersinia pestis Antiqua], gi\|108781432\|... gi\|186696386, gi... - gi\|186893360\|ref\|YP_001870472.1\| hypothetical protein YPTS_0016 [Yersinia pseudotuberculosis PB1/+],... gi\|108810407, gi... - gi\|229900585\|ref\|ZP_04515710.1\| conserved protein [Yersinia pestis Nepal516], gi\|229682366\|gb\|EEO784... gi\|170026405, gi... - gi\|170026405\|ref\|YP_001722910.1\| hypothetical protein YPK_4198 [Yersinia pseudotuberculosis YPIII], ... Q66GG7\|Q66GG7_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|229836123, gi... - gi\|229836123\|ref\|ZP_04456291.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229706571\|gb\|EEO... gi\|229696227, gi... - gi\|229839861\|ref\|ZP_04460020.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229690252, gi... - gi\|229841942\|ref\|ZP_04462097.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|77633416, gi\|... - gi\|77633416\|ref\|ZP_00795548.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25509500 - pir\|\|AG0002 conserved hypothetical protein YPO0013a [imported] - Yersinia pestis (strain CO92) gi\|45439880, gi\|... - gi\|45439880\|ref\|NP_991419.1\| hypothetical protein YP_0015 [Yersinia pestis biovar Microtus str. 9100... gi\|165922079, gi... - gi\|165926219\|ref\|ZP_02222051.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|22127685, gi\|... - gi\|22127685\|ref\|NP_671108.1\| hypothetical protein y3814 [Yersinia pestis KIM], gi\|21960802\|gb\|AAM873... gi\|150260922, gi... - gi\|150260922\|ref\|ZP_01917650.1\| hypothetical protein YPE_3254 [Yersinia pestis CA88-4125], gi\|149290... gi\|115345846, gi... - gi\|218927235\|ref\|YP_002345110.1\| hypothetical protein YPO0013a [Yersinia pestis CO92], gi\|16120367\|r... gi\|153946870, gi... - gi\|77630913\|ref\|ZP_00793499.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|51594373, gi\|... - gi\|51594373\|ref\|YP_068564.1\| hypothetical protein YPTB0015 [Yersinia pseudotuberculosis IP 32953], g...	164.0	[0..1]	[89..1]
gi\|77972094, gi\|... - gi\|77972094\|ref\|ZP_00827673.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia fred...	164.0	[0..1]	[89..1]
gi\|84780736, gi\|... - gi\|85060216\|ref\|YP_455918.1\| hypothetical protein SG2238 [Sodalis glossinidius str. 'morsitans'], gi...	162.0	[0..1]	[89..1]
gi\|91074976, gi\|... - gi\|91213402\|ref\|YP_543388.1\| hypothetical protein UTI89_C4445 [Escherichia coli UTI89], gi\|91074976\|... gi\|226902823, gi... - gi\|237702886\|ref\|ZP_04533367.1\| yihD [Escherichia sp. 3_2_53FAA], gi\|226902823\|gb\|EEH89082.1\| yihD [... gi\|254039067, gi... - gi\|254039067\|ref\|ZP_04873117.1\| yihD [Escherichia sp. 1_1_43], gi\|226838503\|gb\|EEH70532.1\| yihD [Esc... gi\|26111050, gi\|... - gi\|26250619\|ref\|NP_756659.1\| hypothetical protein c4802 [Escherichia coli CFT073], gi\|26111050\|gb\|AA... tr\|A0A0G3HRP7\|A0... - DUF1040 protein YihD protein OS=Escherichia coli (strain K12) GN=yihD PE=4 SV=1	160.0	[0..1]	[89..11]
gi\|49609509, gi\|... - gi\|50118983\|ref\|YP_048150.1\| hypothetical protein ECA0018 [Pectobacterium atrosepticum SCRI1043], gi...	158.0	[0..1]	[89..1]
gi\|5712702 - gi\|5712702\|gb\|AAD47615.1\|AF146615_3 YihD [Pectobacterium carotovorum subsp. carotovorum] gi\|253690590, gi... - gi\|253690590\|ref\|YP_003019780.1\| hypothetical protein PC1_4230 [Pectobacterium carotovorum subsp. ca... gi\|227327113 - gi\|227327113\|ref\|ZP_03831137.1\| hypothetical protein PcarcW_07249 [Pectobacterium carotovorum subsp....	157.0	[0..1]	[89..1]
gi\|53728522, gi\|... - gi\|53728522\|ref\|ZP_00132478.2\| COG3084: Uncharacterized protein conserved in bacteria [Haemophilus s...	156.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKRLNEVI ELLQPAWQKE PDLNLLQFLQ KLAKESGFDG ELADLTDDIL IYHLKMRDSA  60
   61 KDAVIPGLQK DYEEDFKTAL LRARGVIKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.017729
Match:	PF06288.4
Description:	No description for PF06288.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits