YRC Public Data Repository - Protein Structure Prediction

Protein:	YIEG_ECOLI
Organism:	Escherichia coli
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIEG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	269.0	[0..2]	[444..126]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	254.0	[0..2]	[445..16]
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	252.0	[0..1]	[445..43]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	252.0	[0..3]	[445..12]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	252.0	[0..1]	[445..43]
gi\|16504783, gi\|... - gi\|25309459\|pir\|\|AH0956 probable membrane transport protein STY3932 [imported] - Salmonella enterica... gi\|29143966, gi\|... - gi\|29143966\|ref\|NP_807308.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|16762478 - gi\|16762478\|ref\|NP_458095.1\| putative membrane transport protein [Salmonella enterica subsp. enteric...	252.0	[0..1]	[445..43]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	248.0	[0..5]	[445..14]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	247.0	[0..11]	[443..16]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	247.0	[0..11]	[443..16]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHQHTTQTS GQGMLERVFK LREHGTTART EVIAGFTTFL TMVYIVFVNP QILGVAGMDT  60
   61 SAVFVTTCLI AAFGSIMMGL FANLPVALAP AMGLNAFFAF VVVQAMGLPW QVGMGAIFWG 120
  121 AIGLLLLTIF RVRYWMIANI PVSLRVGITS GIGLFIGMMG LKNAGVIVAN PETLVSIGNL 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSHSVLLGIL GFFIIAILAS RNIHAAVLVS IVVTTLLGWM LGDVHYNGIV SAPPSVMTVV  60
   61 GHVDLAGSFN LGLAGVIFSF MLVNLFDSSG TLIGVTDKAG LADEKGKFPR MKQALYVDSI 120
  121 SSVTGSFIGT SSVTAYIESS SGVSVGGRTG LTAVVVGLLF LLVIFLSPLA GMVPGYAAAG 180
  181 ALIYVGVLMT SSLARVNWQD LTESVPAFIT AVMMPFSFSI TEGIALGFIS YCVMKIGTGR 240
  241 LRDLSPCVII VALLFILKIV FIDAH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits