YRC Public Data Repository - Protein Structure Prediction

Protein:	YIDL_ECOLI
Organism:	Escherichia coli
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIDL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13364096, gi\|... - gi\|15833875\|ref\|NP_312648.1\| putative ARAC-type regulatory protein [Escherichia coli O157:H7], gi\|13... gi\|25391717, gi\|... - pir\|\|G86052 probable ARAC-type regulatory protein yidL [imported] - Escherichia coli (strain O157:H7... gi\|12518522, gi\|... - gi\|15804280\|ref\|NP_290319.1\| putative ARAC-type regulatory protein [Escherichia coli O157:H7 EDL933]... gi\|254595089, gi... - gi\|254795689\|ref\|YP_003080526.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|13364096, gi\|... - gi\|15833875\|ref\|NP_312648.1\| putative ARAC-type regulatory protein [Escherichia coli O157:H7 str. Sa...	225.0	[0..1]	[307..1]
gi\|26250424, gi\|... - gi\|26250424\|ref\|NP_756464.1\| putative transcriptional regulator YidL [Escherichia coli CFT073], gi\|2...	216.0	[0..1]	[295..1]
gi\|218367527, gi... - gi\|218560758\|ref\|YP_002393671.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|237703482, gi... - gi\|237703482\|ref\|ZP_04533963.1\| transcriptional regulator YidL [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117625960, gi... - gi\|117625960\|ref\|YP_859283.1\| DNA-binding transcriptional regulator YidL [Escherichia coli APEC O1],... gi\|91074780, gi\|... - gi\|91213206\|ref\|YP_543192.1\| transcriptional regulator YidL [Escherichia coli UTI89], gi\|91074780\|gb...	216.0	[0..1]	[295..1]
gi\|110807625, gi... - gi\|110807625\|ref\|YP_691145.1\| putative ARAC-type regulatory protein [Shigella flexneri 5 str. 8401],...	211.0	[0..11]	[307..1]
gi\|24054261, gi\|... - gi\|24115006\|ref\|NP_709516.1\| putative ARAC-type regulatory protein [Shigella flexneri 2a str. 301], ... gi\|30064992, gi\|... - gi\|30064992\|ref\|NP_839163.1\| putative ARAC-type regulatory protein [Shigella flexneri 2a str. 2457T]...	209.0	[0..11]	[307..1]
gi\|110345619, gi... - gi\|110644027\|ref\|YP_671757.1\| transcriptional regulator YidL [Escherichia coli 536], gi\|110345619\|gb... gi\|191170388, gi... - gi\|191170388\|ref\|ZP_03031941.1\| transcriptional regulator, AraC family protein [Escherichia coli F11...	198.0	[0..11]	[295..1]
gi\|75258221 - gi\|75258221\|ref\|ZP_00729669.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75236404 - gi\|75236404\|ref\|ZP_00720500.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75231051 - gi\|75231051\|ref\|ZP_00717486.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75210707 - gi\|75210707\|ref\|ZP_00710848.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75188438 - gi\|75188438\|ref\|ZP_00701705.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|83588453 - gi\|83588453\|ref\|ZP_00927077.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi...	186.0	[0..36]	[307..1]
gi\|28900386, gi\|... - gi\|28900386\|ref\|NP_800041.1\| AraC/XylS family transcriptional regulator [Vibrio parahaemolyticus RIM... gi\|28808697 - gi\|28808697\|dbj\|BAC61874.1\| transcriptional regulator, AraC/XylS family [Vibrio parahaemolyticus RIM...	163.0	[0..49]	[294..20]
gi\|254228917, gi... - gi\|75856724\|ref\|ZP_00764348.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Vibrio sp....	160.0	[0..49]	[294..17]
gi\|71279582, gi\|... - gi\|71279582\|ref\|YP_269560.1\| AraC family substrate binding transcriptional regulator [Colwellia psyc...	160.0	[0..50]	[296..18]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIIRRRDIK MNGKLQSSDV KNETPYNIPL LINENVISSG ISLISLWHTY ADEHYRVIWP  60
   61 RDKKKPLIAN SWVAVYTVQG CGKILLKNGE QITLHGNCII FLKPMDIHSY HCEGLVWEQY 120
  121 WMEFTPTSMM DIPVGQQSVI YNGEIYNQEL TEVAELITSP EAIKNNLAVA FLTKIIYQWI 180
  181 CLMYADGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1xjaA
Description:	Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [190-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPQRRQIEKL IATLHASLQQ RWSVADMAAT IPCSEAWLRR LFLRYTGKTP KEYYLDARLD  60
   61 LALSLLKQQG NSVGEVADTL NFFDSFHFSK AFKHKFGYAP SAVLKNTDQH PTDASPHN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1d5yA
Description:	Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits