YRC Public Data Repository - Protein Structure Prediction

Protein:	YIDH_ECOLI
Organism:	Escherichia coli
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIDH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|38109647, gi\|... - gi\|39958840\|ref\|XP_364446.1\| hypothetical protein MG09291.4 [Magnaporthe grisea 70-15], gb\|EAA55484....	117.0	[0..2]	[114..664]
gi\|42545891, gi\|... - gi\|46107238\|ref\|XP_380678.1\| hypothetical protein FG00502.1 [Gibberella zeae PH-1], gi\|42545891\|gb\|E...	117.0	[0..2]	[114..666]
gi\|111061797 - gi\|111061797\|gb\|EAT82917.1\| hypothetical protein SNOG_09652 [Phaeosphaeria nodorum SN15]	116.0	[0..2]	[110..663]
gi\|116180904, gi... - gi\|88185377\|gb\|EAQ92845.1\| hypothetical protein CHGG_01080 [Chaetomium globosum CBS 148.51], gi\|1161...	115.0	[0..2]	[114..668]
gi\|114188365, gi... - gi\|115443378\|ref\|XP_001218496.1\| vacuolar transporter chaperone 4 [Aspergillus terreus NIH2624], gi\|...	114.0	[0..2]	[114..677]
gi\|49647568 - gi\|49647568\|emb\|CAG82010.1\| YALI0C10945p [Yarrowia lipolytica] gi\|50548463, gi\|... - gi\|50548463\|ref\|XP_501701.1\| YALI0C10945p [Yarrowia lipolytica], gi\|49647568\|emb\|CAG82010.1\| unnamed...	113.0	[0..2]	[111..628]
gi\|66852876, gi\|... - gi\|71001114\|ref\|XP_755238.1\| vacuolar transporter chaperone (Vtc4) [Aspergillus fumigatus Af293], gi...	112.0	[0..2]	[114..667]
gi\|56525338 - gi\|56525338\|emb\|CAH81210.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi] gi\|70951812 - gi\|70951812\|ref\|XP_745117.1\| hypothetical protein [Plasmodium chabaudi chabaudi]	111.0	[0..8]	[112..783]
gi\|23478453 - gi\|23478453\|gb\|EAA15537.1\| possible negative regulator of cdc42p-related [Plasmodium yoelii yoelii] gi\|82539118 - gi\|82539118\|ref\|XP_723972.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	111.0	[0..8]	[112..516]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISRLGEAP DYRFSLANER TFLAWIRTAL GFLAAGVGLD QLAPDFATPV IRELLALLLC  60
   61 LFSGGLAMYG YLRWLRNEKA MRLKEDLPYT NSLLIISLIL MVVAVIVMGL VLYAG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.0
Match:	PF02656.6
Description:	No description for PF02656.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits