YRC Public Data Repository - Protein Structure Prediction

Protein:	YICH_ECOLI
Organism:	Escherichia coli
Length:	569 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YICH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110345488, gi... - gi\|110643896\|ref\|YP_671626.1\| hypothetical protein ECP_3753 [Escherichia coli 536], gi\|110345488\|gb\|...	588.0	[0..1]	[569..9]
gi\|191170509, gi... - gi\|75242566\|ref\|ZP_00726310.1\| hypothetical protein EcolF_01000478 [Escherichia coli F11], gi\|191170...	585.0	[0..1]	[569..1]
gi\|56383949, gi\|... - gi\|56480398\|ref\|NP_709435.2\| hypothetical protein SF3695 [Shigella flexneri 2a str. 301], gi\|5638394... gi\|30065069, gi\|... - gi\|30065069\|ref\|NP_839240.1\| hypothetical protein S4074 [Shigella flexneri 2a str. 2457T], gi\|300433...	576.0	[0..1]	[569..1]
gi\|117625927, gi... - gi\|117625927\|ref\|YP_859250.1\| hypothetical protein APECO1_2806 [Escherichia coli APEC O1], gi\|115515...	576.0	[0..1]	[569..9]
gi\|110617215, gi... - gi\|110807667\|ref\|YP_691187.1\| hypothetical protein SFV_3874 [Shigella flexneri 5 str. 8401], gi\|1106...	575.0	[0..1]	[569..1]
gi\|91213173, gi\|... - gi\|91213173\|ref\|YP_543159.1\| hypothetical protein UTI89_C4200 [Escherichia coli UTI89], gi\|91074747\|...	575.0	[0..1]	[569..9]
gi\|218556219, gi... - gi\|218556219\|ref\|YP_002389132.1\| hypothetical protein ECIAI1_3829 [Escherichia coli IAI1], gi\|218362... gi\|193063759, gi... - gi\|75258197\|ref\|ZP_00729645.1\| hypothetical protein EcolE2_01001963 [Escherichia coli E22], gi\|19306... gi\|75208672, gi\|... - gi\|75208672\|ref\|ZP_00708969.1\| hypothetical protein EcolB_01004096 [Escherichia coli B171], gi\|19443...	575.0	[0..1]	[569..1]
gi\|157081053, gi... - gi\|75188414\|ref\|ZP_00701681.1\| hypothetical protein EcolE_01001662 [Escherichia coli E24377A], gi\|15...	575.0	[0..1]	[569..1]
gi\|26250302, gi\|... - gi\|26250302\|ref\|NP_756342.1\| hypothetical protein c4480 [Escherichia coli CFT073], gi\|26110732\|gb\|AA...	575.0	[0..1]	[569..9]
gi\|169753043, gi... - gi\|170018115\|ref\|YP_001723069.1\| AsmA family protein [Escherichia coli ATCC 8739], gi\|169753043\|gb\|A... gi\|124528996, gi... - gi\|124528996\|ref\|ZP_01700142.1\| AsmA family protein [Escherichia coli B], gi\|124500135\|gb\|EAY47612.1... gi\|75514282, gi\|... - gi\|75514282\|ref\|ZP_00736590.1\| hypothetical protein Ecol5_01001779 [Escherichia coli 53638], gi\|1884... gi\|157068816, gi... - gi\|75197558\|ref\|ZP_00707628.1\| hypothetical protein EcolH_01003378 [Escherichia coli HS], gi\|1571631...	575.0	[0..1]	[569..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFIGKLLLY ILIALLVAIA GLYFLLQTRW GAEHISAWVS ENSDYHLAFG AMDHRFSAPS  60
   61 HIVLENVTFG RDGQPATLVA KSVDIALSSR QL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.317	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.292	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.275	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.244	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.229	N/A	N/A	d.57.1	DNA damage-inducible protein DinI

Predicted Domain #2

Region A:
Residues: [93-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPRHVDTIL LENGTLNLTD QTAPLPFKAD RLQLRDMAFN SPNSEWKLSA QRVNGGVVPW  60
   61 SPKAGKVLGT KAQIQFSAGS LSLNDVPATN VLIEGSIDND RVTLTNLGAD IARGTLTGNA 120
  121 QRNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [217-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGSWQVENLR MADIRLQSEK SLTDFFAPLR SVPSLQIGRL EVIDARLQGP DWAVTDLDLS  60
   61 LRNMTFSKDD WQTQEGKLSM NASEFIY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [304-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLHLFDPII NTEFSPQGVA LRQFTSRWEG GMVRTSGNWL RDGKTLILDD AAIAGLEYTL  60
   61 PKNWQQLWME TTPGWLNSLQ LKRFSASRNL IIDIDPDFPW QLTALDGYGA NLTLVTD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.602	a.1.1	Globin-like
View	Download	0.582	a.118.12	Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
View	Download	0.457	a.1.1	Globin-like
View	Download	0.393	d.54.1	Enolase N-terminal domain-like
View	Download	0.377	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #5

Region A:
Residues: [421-569]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKWGVWSGSA NLNAAAATFN RVDVRRPSLA LTANSSTVNI SELSAFTEKG ILEATASVSQ  60
   61 TPQRQTHISL NGRGVPVNIL QQWGWPELPL TGDGNIQLTA SGDIQANVPL KPTVSGQLHA 120
  121 VNAAKQQVTQ TMNAGIVSSG EVTSTEPVR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits