YRC Public Data Repository - Protein Structure Prediction

Protein:	YIBN_ECOLI
Organism:	Escherichia coli
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIBN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78367031, gi\|... - gi\|78367031\|ref\|ZP_00837306.1\| Rhodanese-like [Shewanella sp. PV-4], gi\|78360974\|gb\|EAP02803.1\| Rhod...	162.0	[0..1]	[143..27]
gi\|78685378, gi\|... - gi\|78685378\|ref\|ZP_00850156.1\| Rhodanese-like [Shewanella sp. ANA-3], gi\|78506756\|gb\|EAP20271.1\| Rho...	161.0	[0..1]	[143..15]
gi\|82406079, gi\|... - gi\|82495774\|ref\|ZP_00881347.1\| Rhodanese-like [Shewanella sp. MR-4], gi\|82406079\|gb\|EAP46746.1\| Rhod...	161.0	[0..1]	[143..1]
gi\|69953605, gi\|... - gi\|69953605\|ref\|ZP_00640680.1\| Rhodanese-like [Shewanella frigidimarina NCIMB 400], gi\|69163404\|gb\|E...	160.0	[0..1]	[143..1]
gi\|113886999, gi... - gi\|114045557\|ref\|YP_736107.1\| rhodanese domain-containing protein [Shewanella sp. MR-7], gi\|11388699...	157.0	[0..1]	[143..1]
gi\|24345412, gi\|... - gi\|24371650\|ref\|NP_715692.1\| rhodanese domain-containing protein [Shewanella oneidensis MR-1], gi\|24... SO0050 - rhodanese domain protein	157.0	[0..1]	[143..1]
gi\|120600819, gi... - gi\|120600819\|ref\|YP_965393.1\| rhodanese domain-containing protein [Shewanella sp. W3-18-1], gi\|12056... gi\|146291152, gi... - gi\|77814414\|ref\|ZP_00813674.1\| Rhodanese-like [Shewanella putrefaciens CN-32], gi\|77810685\|gb\|EAO950...	155.0	[0..1]	[143..1]
gi\|238783973, gi... - gi\|77958475\|ref\|ZP_00822508.1\| COG0607: Rhodanese-related sulfurtransferase [Yersinia bercovieri ATC...	154.0	[0..1]	[143..2]
gi\|91717044, gi\|... - gi\|91795042\|ref\|YP_564693.1\| rhodanese-like protein [Shewanella denitrificans OS217], gi\|91717044\|gb...	153.0	[0..1]	[143..1]
gi\|124510393, gi... - gi\|124546154\|ref\|ZP_01705270.1\| Rhodanese-like [Shewanella putrefaciens 200], gi\|124510393\|gb\|EAY544... gi\|82718589, gi\|... - gi\|82744056\|ref\|ZP_00906658.1\| Rhodanese-like [Shewanella sp. W3-18-1], gi\|82718589\|gb\|EAP53553.1\| R...	153.0	[0..1]	[143..19]

Back

Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEIMQFVGR HPILSIAWIA LLVAVLVTTF KSLTSKVKVI TRGEATRLIN KEDAVVVDLR  60
   61 QRDDFRKGHI AGSINLLPSE IKANNVGELE KHKDKPVIVV DGSGMQCQEP ANALTKAGFA 120
  121 QVFVLKEGVA GWAGENLPLV RGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	2hhgA
Description:	No description for 2hhgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits