YRC Public Data Repository - Protein Structure Prediction

Protein:	YIAV_ECOLI
Organism:	Escherichia coli
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIAV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194420705, gi... - gi\|83571357\|ref\|ZP_00922797.1\| COG1566: Multidrug resistance efflux pump [Shigella dysenteriae 1012]...	234.0	[0..1]	[378..1]
gi\|75188350, gi\|... - gi\|75188350\|ref\|ZP_00701617.1\| COG1566: Multidrug resistance efflux pump [Escherichia coli E24377A],...	234.0	[0..1]	[378..1]
gi\|229517439, gi... - gi\|229517439\|ref\|ZP_04406884.1\| multidrug resistance efflux pump [Vibrio cholerae RC9], gi\|229345475... gi\|229506775, gi... - gi\|229506775\|ref\|ZP_04396284.1\| multidrug resistance efflux pump [Vibrio cholerae BX 330286], gi\|229... gi\|227010818, gi... - gi\|227811676\|ref\|YP_002811686.1\| hypothetical protein VCM66_A0045 [Vibrio cholerae M66-2], gi\|227010... gi\|254850315, gi... - gi\|75831781\|ref\|ZP_00761041.1\| COG1566: Multidrug resistance efflux pump [Vibrio cholerae MO10], gi\|... gi\|227119230, gi... - gi\|75825011\|ref\|ZP_00754447.1\| COG1566: Multidrug resistance efflux pump [Vibrio cholerae O395], gi\|... gi\|121628488, gi... - gi\|75814820\|ref\|ZP_00745367.1\| COG1566: Multidrug resistance efflux pump [Vibrio cholerae V52], gi\|1... gi\|121549878, gi... - gi\|121585942\|ref\|ZP_01675735.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215498... gi\|124117484, gi... - gi\|153224774\|ref\|ZP_01954585.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241174... gi\|126512762, gi... - gi\|153816743\|ref\|ZP_01969410.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|126518803, gi... - gi\|229510430\|ref\|ZP_04399910.1\| multidrug resistance efflux pump [Vibrio cholerae B33], gi\|229352875... gi\|15600818, gi\|... - gi\|9657429\|gb\|AAF95961.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|11354743 - pir\|\|H82507 conserved hypothetical protein VCA0047 [imported] - Vibrio cholerae (strain N16961 serog... gi\|229371735, gi... - gi\|229605249\|ref\|YP_002875953.1\| multidrug resistance efflux pump [Vibrio cholerae MJ-1236], gi\|2293...	234.0	[0..1]	[378..1]
gi\|27367882, gi\|... - gi\|27367882\|ref\|NP_763409.1\| multidrug resistance efflux pump [Vibrio vulnificus CMCP6], gi\|27359455...	233.0	[0..1]	[378..1]
gi\|75197493, gi\|... - gi\|75197493\|ref\|ZP_00707563.1\| COG1566: Multidrug resistance efflux pump [Escherichia coli HS], gi\|1... gi\|75515951, gi\|... - gi\|75515951\|ref\|ZP_00738069.1\| COG1566: Multidrug resistance efflux pump [Escherichia coli 53638], g...	232.0	[0..1]	[378..1]
gi\|168753401, gi... - gi\|189359260\|gb\|EDU77679.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|188018357, gi... - gi\|188018357\|gb\|EDU56479.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|189002488, gi... - gi\|189002488\|gb\|EDU71474.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|254594937, gi... - gi\|254795537\|ref\|YP_003080374.1\| membrane fusion protein (MFP) component of efflux pump, signal anch... gi\|168772456, gi... - gi\|187771732\|gb\|EDU35576.1\| auxiliary transport protein, membrane fusion protein family [Escherichia... gi\|209755028, gi... - pir\|\|E86033 probable membrane protein yiaV [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|168765996, gi... - gi\|189364364\|gb\|EDU82783.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|189369582, gi... - gi\|189369582\|gb\|EDU87998.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|12518324, gi\|... - gi\|15804126\|ref\|NP_290165.1\| hypothetical protein Z5006 [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|15833716, gi\|... - gi\|15833716\|ref\|NP_312489.1\| hypothetical protein ECs4462 [Escherichia coli O157:H7], gi\|13363937\|db... gi\|15833716, gi\|... - gi\|15833716\|ref\|NP_312489.1\| hypothetical protein ECs4462 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208725901, gi... - gi\|208806100\|ref\|ZP_03248437.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|195935111 - gi\|195935111\|ref\|ZP_03080493.1\| hypothetical protein EscherichcoliO157_01425 [Escherichia coli O157:... gi\|168797420, gi... - gi\|189379961\|gb\|EDU98377.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|189374643, gi... - gi\|189374643\|gb\|EDU93059.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|217320659, gi... - gi\|217324438\|ref\|ZP_03440522.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|209162374, gi... - gi\|209400974\|ref\|YP_002273065.1\| auxiliary transport protein, membrane fusion protein (MFP) family [... gi\|208820408, gi... - gi\|208820408\|ref\|ZP_03260728.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|208812197, gi... - gi\|208812197\|ref\|ZP_03253526.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E...	232.0	[0..1]	[378..1]
gi\|37676009, gi\|... - gi\|37676009\|ref\|NP_936405.1\| multidrug resistance efflux pump [Vibrio vulnificus YJ016], gi\|37200549...	231.0	[0..1]	[378..1]
gi\|191165234, gi... - gi\|75231569\|ref\|ZP_00717927.1\| COG1566: Multidrug resistance efflux pump [Escherichia coli B7A], gi\|... gi\|218362915, gi... - gi\|218556147\|ref\|YP_002389060.1\| membrane fusion protein (MFP) component of efflux pump, signal anch...	231.0	[0..1]	[378..1]
gi\|110617289, gi... - gi\|110807741\|ref\|YP_691261.1\| hypothetical protein SFV_3948 [Shigella flexneri 5 str. 8401], gi\|1106...	229.0	[0..1]	[378..1]
gi\|82545957, gi\|... - gi\|82545957\|ref\|YP_409904.1\| hypothetical protein SBO_3595 [Shigella boydii Sb227], gi\|81247368\|gb\|A...	226.0	[0..1]	[378..1]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLIILTYV AFAWAMFKIF KIPVNKWTIP TAALGGIFIV SGLILLMNYN HPYTFKAQKA  60
   61 VISIPVVPQV TGVVIEVTDK KNTLIKKGEV LFRLDPTRYQ ARVDRLMADI VTAEHKQRAL 120
  121 GAELDEMAAN TQQAKATRDK FAKEYQRYAR GSQAKVNPFS ERDIDVARQN YLAQEASVKS 180
  181 SAAEQKQIQS QLDSLVLGEH SQIASLKAQL AEAKYNLEQT IVRAPSDGYV TQVLIRPGTY 240
  241 AASLPLRPVM VFIPDQKRQI VAQFRQNSLL RLAPGDDAEV VFNALPGKVF SGKLAAISPA 300
  301 VPGGAYQSTG TLQTLNTAPG SDGVIATIEL DEHTDLSALP DGIYAQVAVY SDHFSHVSVM 360
  361 RKVLLRMTSW VHYLYLDH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2f1mA
Description:	No description for 2f1mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits