YRC Public Data Repository - Protein Structure Prediction

Protein:	YIAJ_ECOLI
Organism:	Escherichia coli
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIAJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77995476, gi\|... - gi\|78043361\|ref\|YP_360107.1\| IclR family transcriptional regulator [Carboxydothermus hydrogenoforman...	287.0	[0..15]	[273..2]
gi\|76589242, gi\|... - gi\|76795434\|ref\|ZP_00777807.1\| regulatory proteins, IclR [Thermoanaerobacter ethanolicus ATCC 33223]... gi\|241902590, gi... - gi\|241902590\|ref\|ZP_04787323.1\| transcriptional regulator, IclR family [Thermoanaerobacter brockii s...	280.0	[0..15]	[274..1]
gi\|39982384, gi\|... - gi\|39995621\|ref\|NP_951572.1\| IclR family transcriptional regulator [Geobacter sulfurreducens PCA], g...	272.0	[0..13]	[274..1]
gi\|149948938, gi... - gi\|77687227\|ref\|ZP_00802500.1\| regulatory proteins, IclR [Alkaliphilus metalliredigenes QYMF], gi\|77...	268.0	[0..20]	[274..2]
gi\|56379913, gi\|... - gi\|56420071\|ref\|YP_147389.1\| IclR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	267.0	[0..18]	[277..5]
gi\|78195475, gi\|... - gi\|78224220\|ref\|YP_385967.1\| IclR family transcriptional regulator [Geobacter metallireducens GS-15]...	264.0	[0..13]	[273..1]
gi\|30043402, gi\|... - gi\|30065141\|ref\|NP_839312.1\| putative regulator [Shigella flexneri 2a str. 2457T], gi\|30043402\|gb\|AA... gi\|209921041, gi... - gi\|209921041\|ref\|YP_002295125.1\| putative transcriptional regulator [Escherichia coli SE11], gi\|2099... gi\|218697291, gi... - gi\|218697291\|ref\|YP_002404958.1\| DNA-binding transcriptional repressor [Escherichia coli 55989], gi\|... gi\|82545945, gi\|... - gi\|82545945\|ref\|YP_409892.1\| putative regulator [Shigella boydii Sb227], gi\|81247356\|gb\|ABB68064.1\| ... gi\|24114849, gi\|... - gi\|24114849\|ref\|NP_709359.1\| putative regulator [Shigella flexneri 2a str. 301], gi\|24054084\|gb\|AAN4...	262.0	[0..1]	[282..1]
gi\|75179828 - gi\|75179828\|ref\|ZP_00699815.1\| COG1414: Transcriptional regulator [Shigella boydii BS512]	262.0	[0..1]	[282..1]
gi\|147676812, gi... - gi\|98659900\|dbj\|GAA02725.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476768...	262.0	[0..15]	[271..9]
gi\|15614700, gi\|... - gi\|15614700\|ref\|NP_243003.1\| IclR family transcriptional regulator [Bacillus halodurans C-125], gi\|1... gi\|25298235 - pir\|\|A83917 transcription regulator (IclR family) BH2137 [imported] - Bacillus halodurans (strain C-...	262.0	[0..23]	[273..2]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEVMGKKE NEMAQEKERP AGSQSLFRGL MLIEILSNYP NGCPLAHLSE LAGLNKSTVH  60
   61 RLLQGLQSCG YVTTAPAAGS YRLTTKFIAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.62
Match:	2o0yA
Description:	No description for 2o0yA was found.

Predicted Domain #2

Region A:
Residues: [91-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKALSSLNI IHIAAPHLEA LNIATGETIN FSSREDDHAI LIYKLEPTTG MLRTRAYIGQ  60
   61 HMPLYCSAMG KIYMAFGHPD YVKSYWESHQ HEIQPLTRNT ITELPAMFDE LAHIRESGAA 120
  121 MDREENELGV SCIAVPVFDI HGRVPYAVSI SLSTSRLKQV GEKNLLKPLR ETAQAISNEL 180
  181 GFTVRDDLGA IT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1ysqA
Description:	The crystal structure of transcriptional regulator YaiJ
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits