YRC Public Data Repository - Protein Structure Prediction

Protein:	YHJJ_ECOLI
Organism:	Escherichia coli
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHJJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73981963 - gi\|73981963\|ref\|XP_533104.2\| PREDICTED: similar to Mitochondrial processing peptidase beta subunit, ...	364.0	[0..7]	[464..53]
gi\|146273710, gi... - gi\|98660542\|dbj\|GAA02255.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476776...	363.0	[0..33]	[466..2]
gi\|109645599, gi... - gi\|109645599\|ref\|ZP_01369519.1\| peptidase M16-like [Desulfitobacterium hafniense DCB-2], gi\|10964354...	361.0	[0..33]	[468..5]
gi\|89334700, gi\|... - gi\|89895252\|ref\|YP_518739.1\| hypothetical protein DSY2506 [Desulfitobacterium hafniense Y51], gi\|893...	360.0	[0..33]	[468..2]
MPPB_BOVIN - Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1	358.0	[0..19]	[463..45]
MPPB_PONPY - Mitochondrial-processing peptidase subunit beta, mitochondrial precursor - Pongo pygmaeus (Orangutan... MPPB_PONAB - Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1	353.0	[0..19]	[463..44]
gi\|114615264 - gi\|114615264\|ref\|XP_001160333.1\| PREDICTED: mitochondrial processing peptidase beta subunit isoform ...	352.0	[0..3]	[463..15]
PMPCB - peptidase (mitochondrial processing) beta	351.0	[0..19]	[464..44]
gi\|74151629 - gi\|74151629\|dbj\|BAE41163.1\| unnamed protein product [Mus musculus]	351.0	[0..19]	[463..35]

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Predicted Domain #1

Region A:
Residues: [1-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTKIRLLA GGLLMMATAG YVQADALQPD PAWQQGTLSN GLQWQVLTTP QRPSDRVEIR  60
   61 LLVNTGSLAE STQQSGYSHA IPRIALTQSG GLDAAQARSL WQQGIDPKRP MPPVIVSYDT 120
  121 TLFNLSLPNN RNDLLKEALS YLANATGKLT ITPETINHAL QSQDMVATWP ADTKEGWWRY 180
  181 RLKGSTLLGH DPADPLKQPV EAEKIKDFYQ KWYTPDAMTL LVVGNVDARS VVDQINKTFG 240
  241 ELKGKRETPA PVPTLSPLRA EAVSIMTDAV RQDRLSIMWD TPWQPIRESA ALLRYWRADL 300
  301 AREALFWHVQ QALSASNSKD IGLGFDCRVL YLRAQCAINI ESPNDKLNSN LNLVARELAK 360
  361 VRDKGLPEEE FNALVAQKKL ELQKLFAAYA RADTDILMGQ RMRSLQNQVV DIAPEQYQKL 420
  421 RQDFLNSLTV EMLNQDLRQQ LSNDMALILL QPKGEPEFNM KALQAVWDQI MAPSTAAATT 480
  481 SVATDDVHPE VTDIPPAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.045757
Match:	1be3A
Description:	Cytochrome bc1 core subunit 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.776411853697968	bayes_pls_golite062009
hydrolase activity	0.29932275169812	bayes_pls_golite062009
peptidase activity	0.21333705178776	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: