YRC Public Data Repository - Protein Structure Prediction

Protein:	YHJG_ECOLI
Organism:	Escherichia coli
Length:	691 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHJG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81243706, gi\|... - gi\|82779558\|ref\|YP_405907.1\| hypothetical protein SDY_4544 [Shigella dysenteriae Sd197], gi\|81243706...	435.0	[0..1]	[691..1]
gi\|15833658, gi\|... - gi\|15833658\|ref\|NP_312431.1\| hypothetical protein ECs4404 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25339930, gi\|... - pir\|\|D91179 hypothetical protein ECs4404 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15833658, gi\|... - gi\|15833658\|ref\|NP_312431.1\| hypothetical protein ECs4404 [Escherichia coli O157:H7], gi\|13363878\|db...	435.0	[0..1]	[691..1]
gi\|227883684, gi... - gi\|227883684\|ref\|ZP_04001489.1\| AsmA family protein [Escherichia coli 83972], gi\|227839264\|gb\|EEJ497... gi\|26110586, gi\|... - gi\|26250157\|ref\|NP_756197.1\| hypothetical protein c4335 [Escherichia coli CFT073], gi\|26110586\|gb\|AA...	434.0	[0..1]	[691..1]
gi\|218429372, gi... - gi\|218691808\|ref\|YP_002400020.1\| putative outer membrane biogenesis protein [Escherichia coli ED1a],... gi\|91213030, gi\|... - gi\|91213030\|ref\|YP_543016.1\| hypothetical protein UTI89_C4056 [Escherichia coli UTI89], gi\|91074604\|... gi\|117625807, gi... - gi\|117625807\|ref\|YP_859130.1\| putative outer membrane biogenesis protein YhjG [Escherichia coli APEC... gi\|226902557, gi... - gi\|237703293\|ref\|ZP_04533774.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	434.0	[0..1]	[691..1]
gi\|25339933 - pir\|\|E86025 hypothetical protein yhjG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518239, gi\|... - gi\|15804068\|ref\|NP_290104.1\| hypothetical protein Z4937 [Escherichia coli O157:H7 EDL933], gi\|125182...	434.0	[0..1]	[691..1]
gi\|73857699, gi\|... - gi\|74314222\|ref\|YP_312641.1\| hypothetical protein SSON_3867 [Shigella sonnei Ss046], gi\|73857699\|gb\|...	434.0	[0..1]	[691..1]
gi\|110643771, gi... - gi\|110643771\|ref\|YP_671501.1\| AsmA family protein [Escherichia coli 536], gi\|110345363\|gb\|ABG71600.1...	432.0	[0..1]	[691..1]
gi\|71556873, gi\|... - gi\|71736320\|ref\|YP_276610.1\| AsmA family protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|7...	427.0	[0..4]	[690..34]
gi\|157156366, gi... - gi\|75188289\|ref\|ZP_00701556.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	425.0	[0..6]	[691..1]
sp\|P37645\|YHJG_ECOLI - Uncharacterized protein yhjG OS=Escherichia coli (strain K12) GN=yhjG PE=4 SV=3 EG12251 - putative inner membrane-anchored periplasmic AsmA family protein / Putative inner membrane-anchored ... gi\|75260191, gi\|... - gi\|75260191\|ref\|ZP_00731459.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|75237462, gi\|... - gi\|75237462\|ref\|ZP_00721495.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|190904662, gi... - gi\|75231630\|ref\|ZP_00717988.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|194413269, gi... - gi\|75210069\|ref\|ZP_00710248.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|75197440, gi\|... - gi\|75197440\|ref\|ZP_00707510.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|187428632, gi... - gi\|75179846\|ref\|ZP_00699833.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|194425218, gi... - gi\|83588621\|ref\|ZP_00927245.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|209920984, gi... - gi\|209920984\|ref\|YP_002295068.1\| hypothetical protein ECSE_3793 [Escherichia coli SE11], gi\|20991424... gi\|194431230, gi... - gi\|83571529\|ref\|ZP_00922969.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... EG12251 - putative inner membrane-anchored periplasmic AsmA family protein / Putative inner membrane-anchored ...	424.0	[0..6]	[691..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRTMSKAG KITAAISGAF LLLIVVAIIL IATFDWNRLK PTINQKVSAE LNRPFAIRGD  60
   61 LGVVWERQKQ ETGWRSWVPW PHVHAEDIIL GNPPDIPEVT MVHLPRVEAT LAPLALLTKT 120
  121 VWLPWIKLEK PDARLIRLSE KNNNWTFNLA NDDNKDANAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSAWSFRLDN ILFDQGRIAI DDKVSKADLE IFVDPLGKPL PFSEVTGSKG KADKEKVGDY  60
   61 VFGLKAQGRY NGEPLTGTGK IGGMLALRGE GTPFPVQADF RSGNTRVAFD GVVNDPMKMG 120
  121 GVDLRLKFSG DSLGDLYELT GVLLPDTPPF ETDGRLVAKI DTEKSSVFDY RGFNGRIGDS 180
  181 DIHGSLVYTT GKPRPKLEGD VESRQLRLAD LGPLIGVDSG KGAEKSKRSE QKKGEKSVQP 240
  241 AG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [403-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVLPYDRFET DKWDVMDADV RFKGRRIEHG SSLPISDLST HIILKNADLR LQPLKFGMAG  60
   61 GSIAANIHLE GD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.513	0.982	integral to membrane	b.1.1	Immunoglobulin

Predicted Domain #4

Region A:
Residues: [475-691]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPMQGRADI QARRLKLKEL MPDVELMQKT LGEMNGDAEL RGSGNSVAAL LGNSNGNLKL  60
   61 LMNDGLVSRN LMEIVGLNVG NYIVGAIFGD DEVRVNCAAA NLNIANGVAR PQIFAFDTEN 120
  121 ALINVTGTAS FASEQLDLTI DPESKGIRII TLRSPLYVRG TFKNPQAGVK AGPLIARGAV 180
  181 AAALATLVTP AAALLALISP SEGEANQCRT ILSQMKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits