YRC Public Data Repository - Protein Structure Prediction

Protein:	YHJA_ECOLI
Organism:	Escherichia coli
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHJA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218429366, gi... - gi\|218691802\|ref\|YP_002400014.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli ED1a], gi\|2184... gi\|191170365, gi... - gi\|75242690\|ref\|ZP_00726434.1\| COG1858: Cytochrome c peroxidase [Escherichia coli F11], gi\|191170365...	438.0	[0..1]	[465..1]
gi\|227839257, gi... - gi\|227883677\|ref\|ZP_04001482.1\| cytochrome C peroxidase [Escherichia coli 83972], gi\|227839257\|gb\|EE... gi\|26110580, gi\|... - gi\|26250151\|ref\|NP_756191.1\| cytochrome C peroxidase [Escherichia coli CFT073], gi\|26110580\|gb\|AAN82...	438.0	[0..1]	[465..1]
gi\|110807780, gi... - gi\|110807780\|ref\|YP_691300.1\| putative cytochrome C peroxidase [Shigella flexneri 5 str. 8401], gi\|1... gi\|56383926, gi\|... - gi\|56480375\|ref\|NP_709337.2\| putative cytochrome C peroxidase [Shigella flexneri 2a str. 301], gi\|56... gi\|30043422, gi\|... - gi\|30065161\|ref\|NP_839332.1\| putative cytochrome C peroxidase [Shigella flexneri 2a str. 2457T], gi\|...	438.0	[0..1]	[465..1]
gi\|209914237, gi... - gi\|209920978\|ref\|YP_002295062.1\| putative cytochrome C peroxidase [Escherichia coli SE11], gi\|209914... gi\|193061723, gi... - gi\|75260197\|ref\|ZP_00731465.1\| COG1858: Cytochrome c peroxidase [Escherichia coli E22], gi\|193061723... gi\|75237456, gi\|... - gi\|75237456\|ref\|ZP_00721489.1\| COG1858: Cytochrome c peroxidase [Escherichia coli E110019], gi\|19306... gi\|190904665, gi... - gi\|75231636\|ref\|ZP_00717994.1\| COG1858: Cytochrome c peroxidase [Escherichia coli B7A], gi\|191165263... gi\|194413301, gi... - gi\|75210063\|ref\|ZP_00710242.1\| COG1858: Cytochrome c peroxidase [Escherichia coli B171], gi\|19442871... gi\|218556068, gi... - gi\|218556068\|ref\|YP_002388981.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli IAI1], gi\|2183... gi\|218697227, gi... - gi\|218697227\|ref\|YP_002404894.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli 55989], gi\|218...	437.0	[0..1]	[465..1]
gi\|237703285, gi... - gi\|237703285\|ref\|ZP_04533766.1\| cytochrome C peroxidase [Escherichia sp. 3_2_53FAA], gi\|226902549\|gb... gi\|91213024, gi\|... - gi\|91213024\|ref\|YP_543010.1\| cytochrome C peroxidase [Escherichia coli UTI89], gi\|91074598\|gb\|ABE094... gi\|218560593, gi... - gi\|218560593\|ref\|YP_002393506.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli S88], gi\|21836... gi\|115514925, gi... - gi\|117625801\|ref\|YP_859124.1\| putative cytochrome C peroxidase [Escherichia coli APEC O1], gi\|115514...	437.0	[0..1]	[465..1]
gi\|82545882, gi\|... - gi\|82545882\|ref\|YP_409829.1\| putative cytochrome C peroxidase [Shigella boydii Sb227], gi\|81247293\|g...	436.0	[0..1]	[465..1]
gi\|15804062, gi\|... - gi\|15804062\|ref\|NP_290098.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 EDL933], gi\|... gi\|208821426, gi... - gi\|208821426\|ref\|ZP_03261746.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|208733197, gi... - gi\|208811920\|ref\|ZP_03253249.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|217321721, gi... - gi\|217325500\|ref\|ZP_03441584.1\| di-hem cytochrome c peroxidase [Escherichia coli O157:H7 str. TW1458... gi\|209159035, gi... - gi\|209397635\|ref\|YP_002272996.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O1... gi\|189379988, gi... - gi\|189379988\|gb\|EDU98404.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189374697, gi... - gi\|189374697\|gb\|EDU93113.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|208807304, gi... - gi\|208807304\|ref\|ZP_03249641.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|195935046 - gi\|195935046\|ref\|ZP_03080428.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 str. EC40... gi\|189364649, gi... - gi\|189364649\|gb\|EDU83068.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189369613, gi... - gi\|189369613\|gb\|EDU88029.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189002274, gi... - gi\|189002274\|gb\|EDU71260.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|187771627, gi... - gi\|187771627\|gb\|EDU35471.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|254795471, gi... - gi\|254795471\|ref\|YP_003080308.1\| predicted cytochrome C peroxidase [Escherichia coli O157:H7 str. TW... gi\|189359389, gi... - gi\|189359389\|gb\|EDU77808.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|168746944, gi... - gi\|188018360\|gb\|EDU56482.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|13363872, gi\|... - gi\|15833652\|ref\|NP_312425.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 str. Sakai],... gi\|13363872, gi\|... - gi\|15833652\|ref\|NP_312425.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7], gi\|1336387... gi\|25285572, gi\|... - pir\|\|G86024 cytochrome-c peroxidase (EC 1.11.1.5) [similarity] - Escherichia coli (strain O157:H7, s...	436.0	[0..1]	[465..1]
gi\|124500406, gi... - gi\|124528565\|ref\|ZP_01699843.1\| Cytochrome-c peroxidase [Escherichia coli B], gi\|124500406\|gb\|EAY478... gi\|74313936, gi\|... - gi\|74313936\|ref\|YP_312355.1\| putative cytochrome C peroxidase [Shigella sonnei Ss046], gi\|73857413\|g... gi\|188496398, gi... - gi\|75516021\|ref\|ZP_00738139.1\| COG1858: Cytochrome c peroxidase [Escherichia coli 53638], gi\|1884963... gi\|75197434, gi\|... - gi\|75197434\|ref\|ZP_00707504.1\| COG1858: Cytochrome c peroxidase [Escherichia coli HS], gi\|157162997\|... gi\|170018253, gi... - gi\|170018253\|ref\|YP_001723207.1\| cytochrome-c peroxidase [Escherichia coli ATCC 8739], gi\|169753181\|...	436.0	[0..1]	[465..1]
gi\|83571537, gi\|... - gi\|83571537\|ref\|ZP_00922977.1\| COG1858: Cytochrome c peroxidase [Shigella dysenteriae 1012], gi\|1944...	434.0	[0..1]	[465..1]
lcl\|NC_016856.1_... - [gene=STM14_4612] [protein=putative cytochrome c peroxidase] [protein_id=YP_005240086.1] [location=c... gi\|194401554, gi... - gi\|194442891\|ref\|YP_002043068.1\| cytochrome-c peroxidase [Salmonella enterica subsp. enterica serova... gi\|197251117, gi... - gi\|197251117\|ref\|YP_002148758.1\| cytoChrome-c peroxidase [Salmonella enterica subsp. enterica serova... gi\|213022072 - gi\|213022072\|ref\|ZP_03336519.1\| cytoChrome-c peroxidase [Salmonella enterica subsp. enterica serovar... gi\|213980005 - gi\|213980005\|ref\|ZP_03407264.1\| cytoChrome-c peroxidase [Salmonella enterica subsp. enterica serovar... gi\|29139627, gi\|... - gi\|29143991\|ref\|NP_807333.1\| cytochrome c peroxidase [Salmonella enterica subsp. enterica serovar Ty... gi\|16762502 - gi\|16762502\|ref\|NP_458119.1\| cytochrome c peroxidase [Salmonella enterica subsp. enterica serovar Ty... gi\|16504807, gi\|... - gi\|25285574\|pir\|\|AB0960 probable cytochrome-c peroxidase (EC 1.11.1.5) [imported] - Salmonella enter... gi\|167992410, gi... - gi\|205329434\|gb\|EDZ16198.1\| cytochrome-c peroxidase [Salmonella enterica subsp. enterica serovar 4,[... gi\|16422392, gi\|... - gi\|16767105\|ref\|NP_462720.1\| putative cytochrome c peroxidase [Salmonella typhimurium LT2], gi\|16422... gi\|168464853, gi... - gi\|195632288\|gb\|EDX50772.1\| cytoChrome-c peroxidase [Salmonella enterica subsp. enterica serovar New...	411.0	[0..1]	[463..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMVSRITAI GLAGVAICYL GLSGYVWYHD NKRSKQADVQ ASAVSENNKV LGFLREKGCD  60
   61 YCHTPSAELP AYYYIPGAKQ LMDYDIKLGY KSFNLEAVRA ALLADKPVSQ SDLNKIEWVM 120
  121 QYETMPPTRY TALHWAGKVS DEERAEILAW IAKQRAEYY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.8
Match:	1w5cT
Description:	Photosystem II from Thermosynechococcus elongatus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [160-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASNDTAPEHR NEPVQPIPQK LPTDAQKVAL GFALYHDPRL SADSTISCAH CHALNAGGVD  60
   61 GRKTSIGVGG AVGPINAPTV FNSVFNVEQF WDGRAATLQD QAGGPPLNPI EMASKSWDEI 120
  121 IAKLEKDPQL KTQFLEVYPQ GFSGENITDA IAEFEKTLIT PDSPFDKWLR GDENALTAQQ 180
  181 KKGYQLFKDN KCATCHGGII LGGRSFEPLG LKKDFNFGEI TAADIGRMNV TKEERDKLRQ 240
  241 KVPGLRNVAL TAPYFHRGDV PTLDGAVKLM LRYQVGKELP QEDVDDIVAF LHSLNGVYTP 300
  301 YMQDKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.221849
Match:	1iqcA
Description:	Di-heme cytochrome c peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peroxidase activity	1.75209676626315	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	1.75209676626315	bayes_pls_golite062009
antioxidant activity	1.56037732185826	bayes_pls_golite062009
oxidoreductase activity	0.688831040524478	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: