YRC Public Data Repository - Protein Structure Prediction

Protein:	YHHL_ECOLI
Organism:	Escherichia coli
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHHL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|226839140, gi... - gi\|254038634\|ref\|ZP_04872690.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683914... gi\|466602\|gb\|AAB... - overlaps previous ORF, probably uses downstream start [Escherichia coli] gi\|466602 - gi\|466602\|gb\|AAB18441.1\| overlaps previous ORF, probably uses downstream start [Escherichia coli str... tr\|A0A0S1EXW2\|A0... - DUF1145 family protein OS=Escherichia coli (strain K12) GN=yhhL PE=4 SV=1	119.0	[0..1]	[89..42]
gi\|227883612, gi... - gi\|227883612\|ref\|ZP_04001417.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783949... gi\|237703213, gi... - gi\|237703213\|ref\|ZP_04533694.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|251786714, gi... - gi\|251786714\|ref\|YP_003001018.1\| hypothetical protein B21_03268 [Escherichia coli BL21], gi\|24237898... gi\|254163390, gi... - gi\|254163390\|ref\|YP_003046498.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|82778730, gi\|... - gi\|82778730\|ref\|YP_405079.1\| hypothetical protein SDY_3617 [Shigella dysenteriae Sd197], gi\|81242878... gi\|253979447, gi... - gi\|254290140\|ref\|YP_003055888.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|82545829, gi\|... - gi\|82545829\|ref\|YP_409776.1\| hypothetical protein SBO_3463 [Shigella boydii Sb227], gi\|81247240\|gb\|A... gi\|254795386, gi... - gi\|254795386\|ref\|YP_003080223.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|188487190, gi... - gi\|75516069\|ref\|ZP_00738187.1\| COG3776: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|73857543, gi\|... - gi\|74314066\|ref\|YP_312485.1\| hypothetical protein SSON_3704 [Shigella sonnei Ss046], gi\|73857543\|gb\|... gi\|56480350, gi\|... - gi\|56480350\|ref\|NP_709236.2\| hypothetical protein SF3484 [Shigella flexneri 2a str. 301], gi\|5638390... gi\|157162943, gi... - gi\|75197392\|ref\|ZP_00707462.1\| COG3776: Predicted membrane protein [Escherichia coli HS], gi\|1571629... gi\|194426994, gi... - gi\|75211831\|ref\|ZP_00711895.1\| COG3776: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|187427092, gi... - gi\|75179911\|ref\|ZP_00699898.1\| COG3776: Predicted membrane protein [Shigella boydii BS512], gi\|18773... gi\|157081339, gi... - gi\|75188238\|ref\|ZP_00701505.1\| COG3776: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|191170386, gi... - gi\|75242737\|ref\|ZP_00726481.1\| COG3776: Predicted membrane protein [Escherichia coli F11], gi\|191170... gi\|193061754, gi... - gi\|75260247\|ref\|ZP_00731515.1\| COG3776: Predicted membrane protein [Escherichia coli E22], gi\|193061... gi\|75227168, gi\|... - gi\|75227168\|ref\|ZP_00713976.1\| COG3776: Predicted membrane protein [Escherichia coli B7A], gi\|191169... gi\|193068755, gi... - gi\|75237065\|ref\|ZP_00721121.1\| COG3776: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|168759504, gi... - gi\|189369804\|gb\|EDU88220.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189359293, gi... - gi\|189359293\|gb\|EDU77712.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168772625, gi... - gi\|187771604\|gb\|EDU35448.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168765829, gi... - gi\|189364668\|gb\|EDU83087.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|83571609, gi\|... - gi\|83571609\|ref\|ZP_00923049.1\| COG3776: Predicted membrane protein [Shigella dysenteriae 1012], gi\|1... gi\|168785287, gi... - gi\|189374464\|gb\|EDU92880.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|194435619, gi... - gi\|83588672\|ref\|ZP_00927296.1\| COG3776: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|124500456, gi... - gi\|124528615\|ref\|ZP_01699893.1\| protein of unknown function DUF1145 [Escherichia coli B], gi\|1245004... gi\|189002273, gi... - gi\|189002273\|gb\|EDU71259.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|169753230, gi... - gi\|170018302\|ref\|YP_001723256.1\| hypothetical protein EcolC_0250 [Escherichia coli ATCC 8739], gi\|16... gi\|168797252, gi... - gi\|189380060\|gb\|EDU98476.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|209755996, gi... - pir\|\|C86014 hypothetical protein yhhL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15833569, gi\|... - gi\|15833569\|ref\|NP_312342.1\| hypothetical protein ECs4315 [Escherichia coli O157:H7], gi\|13363789\|db... gi\|30065257, gi\|... - gi\|30065257\|ref\|NP_839428.1\| hypothetical protein S4279 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|12518125, gi\|... - gi\|15803978\|ref\|NP_290014.1\| hypothetical protein Z4840 [Escherichia coli O157:H7 EDL933], gi\|125181... gi\|188018382, gi... - gi\|188018382\|gb\|EDU56504.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|110345298, gi... - gi\|110643706\|ref\|YP_671436.1\| hypothetical protein ECP_3559 [Escherichia coli 536], gi\|110345298\|gb\|... gi\|218372197, gi... - gi\|218702211\|ref\|YP_002409840.1\| hypothetical protein ECIAI39_3947 [Escherichia coli IAI39], gi\|2183... gi\|110807293, gi... - gi\|110807293\|ref\|YP_690813.1\| hypothetical protein SFV_3469 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|218691751, gi... - gi\|218691751\|ref\|YP_002399963.1\| hypothetical protein ECED1_4139 [Escherichia coli ED1a], gi\|2184293... gi\|15833569, gi\|... - gi\|15833569\|ref\|NP_312342.1\| hypothetical protein ECs4315 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195934960 - gi\|195934960\|ref\|ZP_03080342.1\| hypothetical protein EscherichcoliO157_00640 [Escherichia coli O157:... gi\|170518803, gi... - gi\|170681085\|ref\|YP_001745715.1\| hypothetical protein EcSMS35_3749 [Escherichia coli SMS-3-5], gi\|17... gi\|208813138, gi... - gi\|208813138\|ref\|ZP_03254467.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208728151, gi... - gi\|208808350\|ref\|ZP_03250687.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|209397555, gi... - gi\|209397555\|ref\|YP_002272910.1\| hypothetical protein ECH74115_4786 [Escherichia coli O157:H7 str. E... gi\|208818439, gi... - gi\|208818439\|ref\|ZP_03258759.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|217322297, gi... - gi\|217326076\|ref\|ZP_03442160.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215488741, gi... - gi\|215488741\|ref\|YP_002331172.1\| hypothetical protein E2348C_3706 [Escherichia coli O127:H6 str. E23...	105.0	[0..1]	[89..1]
gi\|26250081, gi\|... - gi\|26250081\|ref\|NP_756121.1\| hypothetical protein c4259 [Escherichia coli CFT073], gi\|26110510\|gb\|AA... gi\|209914184, gi... - gi\|209920925\|ref\|YP_002295009.1\| hypothetical protein ECSE_3734 [Escherichia coli SE11], gi\|20991418... gi\|91212955, gi\|... - gi\|91212955\|ref\|YP_542941.1\| hypothetical protein UTI89_C3981 [Escherichia coli UTI89], gi\|91074529\|... gi\|24114726, gi\|... - ref\|NP_709236.1\| hypothetical protein SF3484 [Shigella flexneri 2a str. 301], gb\|AAN44943.1\| orf, c...	104.0	[0..1]	[89..2]
gi\|62129705, gi\|... - gi\|62182072\|ref\|YP_218489.1\| hypothetical protein SC3502 [Salmonella enterica subsp. enterica serova... gi\|224469893, gi... - gi\|224585365\|ref\|YP_002639164.1\| hypothetical protein SPC_3642 [Salmonella enterica subsp. enterica ... gi\|199603608, gi... - gi\|200386510\|ref\|ZP_03213122.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197211162, gi... - gi\|197247459\|ref\|YP_002148496.1\| hypothetical protein SeAg_B3775 [Salmonella enterica subsp. enteric... gi\|194450487, gi... - gi\|194450487\|ref\|YP_002047598.1\| hypothetical protein SeHA_C3885 [Salmonella enterica subsp. enteric... gi\|194403328, gi... - gi\|194444665\|ref\|YP_002042818.1\| hypothetical protein SNSL254_A3842 [Salmonella enterica subsp. ente... gi\|168818610, gi... - gi\|205344328\|gb\|EDZ31092.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465146, gi... - gi\|195632304\|gb\|EDX50788.1\| hypothetical protein SNSL317_A4893 [Salmonella enterica subsp. enterica ... gi\|168260698, gi... - gi\|205350214\|gb\|EDZ36845.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168241725, gi... - gi\|205339002\|gb\|EDZ25766.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167549209, gi... - gi\|205325805\|gb\|EDZ13644.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	100.0	[0..1]	[89..1]
gi\|84778580, gi\|... - gi\|85058060\|ref\|YP_453762.1\| hypothetical protein SG0082 [Sodalis glossinidius str. 'morsitans'], gi...	99.0	[0..1]	[89..2]
gi\|206710614, gi... - gi\|207858811\|ref\|YP_002245462.1\| hypothetical protein SEN3396 [Salmonella enterica subsp. enterica s... gi\|205274590, gi... - gi\|205354809\|ref\|YP_002228610.1\| hypothetical protein SG3864 [Salmonella enterica subsp. enterica se... gi\|56129729, gi\|... - gi\|56415472\|ref\|YP_152547.1\| hypothetical protein SPA3424 [Salmonella enterica subsp. enterica serov... gi\|197095878, gi... - gi\|197364401\|ref\|YP_002144038.1\| hypothetical protein SSPA3195 [Salmonella enterica subsp. enterica ...	98.0	[0..1]	[89..2]
gi\|16766859, gi\|... - gi\|16766859\|ref\|NP_462474.1\| hypothetical protein STM3573 [Salmonella typhimurium LT2], gi\|16422133\|... lcl\|NC_016856.1_... - [gene=yhhL] [protein=hypothetical protein] [protein_id=YP_005239785.1] [location=3754628..3754900]	96.0	[0..1]	[89..2]
gi\|113947408, gi... - gi\|113947408\|ref\|ZP_01433074.1\| protein of unknown function DUF1145 [Shewanella baltica OS195], gi\|1...	95.0	[0..1]	[87..16]
gi\|29144218, gi\|... - gi\|29144218\|ref\|NP_807560.1\| hypothetical protein t3949 [Salmonella enterica subsp. enterica serovar... gi\|16762731 - gi\|16762731\|ref\|NP_458348.1\| hypothetical protein STY4238 [Salmonella enterica subsp. enterica serov... gi\|16505037, gi\|... - gi\|25512592\|pir\|\|AE0991 probable membrane protein STY4238 [imported] - Salmonella enterica subsp. en...	94.0	[0..1]	[89..2]
gi\|82743029, gi\|... - gi\|82743029\|ref\|ZP_00905698.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719603\|...	93.0	[0..1]	[88..3]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINIGRLLM LCVWGFLILN LVHPFPRPLN IFVNVALIFT VLMHGMQLAL LKSTLPKDGP  60
   61 QMTTAEKVRI FLFGVFELLA WQKKFKVKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.431798
Match:	PF06611.3
Description:	No description for PF06611.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits