YRC Public Data Repository - Protein Structure Prediction

Protein:	YHGG_ECOLI
Organism:	Escherichia coli
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHGG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|195632517, gi... - gi\|195632517\|gb\|EDX51001.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... FEOC_SALHS - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella heidelberg (strain SL476) GN=feoC ... gi\|194454913, gi... - gi\|194468549\|ref\|ZP_03074533.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALSV - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella schwarzengrund (strain CVM19633) G... gi\|205333082, gi... - gi\|205333082\|gb\|EDZ19846.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|197291466, gi... - gi\|197291466\|gb\|EDY30818.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... FEOC_SALTY - Ferrous iron transport protein C OS=Salmonella typhimurium GN=feoC PE=3 SV=1 gi\|168241648, gi... - gi\|205338872\|gb\|EDZ25636.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... FEOC_SALTI - Ferrous iron transport protein C OS=Salmonella typhi GN=feoC PE=3 SV=1 gi\|168260768, gi... - gi\|205350163\|gb\|EDZ36794.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205330776, gi... - gi\|205330776\|gb\|EDZ17540.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|238910488 - gi\|238910488\|ref\|ZP_04654325.1\| hypothetical protein SentesTe_05034 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=yhgG] [protein=putative cytoplasmic protein] [protein_id=YP_005239709.1] [location=3680365..36... gi\|213616169 - gi\|213616169\|ref\|ZP_03371995.1\| hypothetical protein SentesTyp_17549 [Salmonella enterica subsp. ent... gi\|213852066 - gi\|213852066\|ref\|ZP_03381598.1\| hypothetical protein SentesT_03812 [Salmonella enterica subsp. enter... gi\|214000243 - gi\|214000243\|ref\|ZP_03410978.1\| hypothetical protein Salmonellentericaenterica_06156 [Salmonella ent... gi\|213022701 - gi\|213022701\|ref\|ZP_03337148.1\| hypothetical protein Salmonelentericaenterica_08738 [Salmonella ente... gi\|213163100 - gi\|213163100\|ref\|ZP_03348810.1\| hypothetical protein Salmoneentericaenterica_24978 [Salmonella enter... FEOC_SALPB - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi B (strain ATCC BAA-1250 ... gi\|213419713 - gi\|213419713\|ref\|ZP_03352779.1\| hypothetical protein Salmonentericaenterica_18733 [Salmonella enteri... gi\|213426882 - gi\|213426882\|ref\|ZP_03359632.1\| hypothetical protein SentesTyphi_15500 [Salmonella enterica subsp. e... gi\|197262700, gi... - gi\|197262700\|ref\|ZP_03162774.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALPK - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi A (strain AKU_12601) GN=... gi\|199604655, gi... - gi\|200387557\|ref\|ZP_03214169.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|204322060, gi... - gi\|204928627\|ref\|ZP_03219826.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALTI - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella typhi GN=feoC PE=3 SV=1 gi\|16762780 - gi\|16762780\|ref\|NP_458397.1\| hypothetical protein STY4289 [Salmonella enterica subsp. enterica serov... FEOC_SALPA - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi A (strain ATCC 9150 / SA... FEOC_SALTY - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella typhimurium (strain LT2 / SGSC1412... gi\|29144267, gi\|... - gi\|29144267\|ref\|NP_807609.1\| hypothetical protein t3999 [Salmonella enterica subsp. enterica serovar... FEOC_SALPB - Ferrous iron transport protein C OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=feoC PE=... FEOC_SALPA - Ferrous iron transport protein C OS=Salmonella paratyphi A GN=feoC PE=3 SV=1 FEOC_SALTY - Ferrous iron transport protein C OS=Salmonella typhimurium GN=feoC PE=3 SV=1	131.0	[0..1]	[78..1]
FEOC_ECOL6 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ... gi\|75241499, gi\|... - gi\|75241499\|ref\|ZP_00725344.1\| hypothetical protein EcolF_01001505 [Escherichia coli F11], gi\|191171... gi\|237703141, gi... - gi\|237703141\|ref\|ZP_04533622.1\| ferrous iron transporter C [Escherichia sp. 3_2_53FAA], gi\|226902405... gi\|227839423, gi... - gi\|227883544\|ref\|ZP_04001349.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783942... FEOC_ECOUT - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain UTI89 / UPEC) GN=feo... FEOC_ECO81 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O81 (strain ED1a) GN=feoC PE... FEOC_ECOL6 - Ferrous iron transport protein C OS=Escherichia coli O6 GN=feoC PE=3 SV=2 FEOC_ECOL5 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O6:K15:H31 (strain 536 / UPE... FEOC_ECOK1 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O1:K1 / APEC GN=feoC PE=3 SV... FEOC_ECO45 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) ...	129.0	[0..1]	[78..1]
gi\|26110440, gi\|... - gi\|26250011\|ref\|NP_756051.1\| hypothetical protein c4187 [Escherichia coli CFT073], gi\|26110440\|gb\|AA...	129.0	[0..1]	[78..4]
FEOC_SALNS - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella newport (strain SL254) GN=feoC PE=... FEOC_SALCH - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella choleraesuis (strain SC-B67) GN=fe... gi\|168818680, gi... - gi\|205344576\|gb\|EDZ31340.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|205325664, gi... - gi\|205325664\|gb\|EDZ13503.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... FEOC_SALCH - Ferrous iron transport protein C OS=Salmonella choleraesuis GN=feoC PE=3 SV=1 FEOC_SALCH - Ferrous iron transport protein C OS=Salmonella choleraesuis GN=feoC PE=3 SV=1 FEOC_SALPC - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi C (strain RKS4594) GN=fe... FEOC_SALEP - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella enteritidis PT4 (strain P125109) G... FEOC_SALG2 - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella gallinarum (strain 287/91 / NCTC 1... FEOC_SALDC - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella dublin (strain CT_02021853) GN=feo... FEOC_SALA4 - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella agona (strain SL483) GN=feoC PE=3 ...	128.0	[0..1]	[78..1]
gi\|251786660, gi... - gi\|251786660\|ref\|YP_003000964.1\| hypothetical protein B21_03214 [Escherichia coli BL21], gi\|24237893... gi\|253975239, gi... - gi\|254163338\|ref\|YP_003046446.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... FEOC_SHIFL - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella flexneri GN=feoC PE=3 SV=4 gi\|253979395, gi... - gi\|254290088\|ref\|YP_003055836.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... FEOC_SHIF8 - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella flexneri serotype 5b (strain 8401) G... FEOC_SHISS - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella sonnei (strain Ss046) GN=feoC PE=3 S... gi\|56480333, gi\|... - gi\|56480333\|ref\|NP_709183.2\| hypothetical protein SF3429 [Shigella flexneri 2a str. 301], gi\|5638388... FEOC_ECOSE - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain SE11) GN=feoC PE=3 S... gi\|124528183, gi... - gi\|124528183\|ref\|ZP_01699516.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500838\|gb... FEOC_ECOHS - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O9:H4 (strain HS) GN=feoC PE... gi\|188492911, gi... - gi\|75516122\|ref\|ZP_00738240.1\| hypothetical protein Ecol5_01000182 [Escherichia coli 53638], gi\|1884... gi\|30065307, gi\|... - gi\|30065307\|ref\|NP_839478.1\| hypothetical protein S4334 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|83571669, gi\|... - gi\|83571669\|ref\|ZP_00923109.1\| hypothetical protein Sdys1_01000385 [Shigella dysenteriae 1012], gi\|1... gi\|83588725, gi\|... - gi\|83588725\|ref\|ZP_00927349.1\| hypothetical protein Ecol1_01000358 [Escherichia coli 101-1], gi\|1944... FEOC_ECOLC - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain ATCC 8739 / DSM 1576...	128.0	[0..1]	[78..1]
gi\|110616790, gi... - gi\|110807242\|ref\|YP_690762.1\| hypothetical protein SFV_3415 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114673, gi\|... - ref\|NP_709183.1\| hypothetical protein SF3429 [Shigella flexneri 2a str. 301], gb\|AAN44890.1\| orf, c...	128.0	[0..1]	[78..4]
FEOC_ECO24 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O139:H28 (strain E24377A / E...	126.0	[0..1]	[78..1]
gi\|77978694, gi\|... - gi\|77978694\|ref\|ZP_00834120.1\| hypothetical protein YintA_01001568 [Yersinia intermedia ATCC 29909],...	126.0	[0..1]	[71..1]
gi\|77975060, gi\|... - gi\|77975060\|ref\|ZP_00830597.1\| hypothetical protein YfreA_01001136 [Yersinia frederiksenii ATCC 3364...	124.0	[0..1]	[72..1]
gi\|77956151, gi\|... - gi\|77956151\|ref\|ZP_00820285.1\| hypothetical protein YberA_01003578 [Yersinia bercovieri ATCC 43970],...	122.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLIQVRDL LALRGRMEAA QISQTLNTPQ PMINAMLQQL ESMGKAVRIQ EEPDGCLSGS  60
   61 CKSCPEGKAC LREWWALR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1xn7A
Description:	Solution Structure of E.Coli Protein yhgG: The Northeast Structural Genomics Consortium Target ET95
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits