YRC Public Data Repository - Protein Structure Prediction

Protein:	YHFX_ECOLI
Organism:	Escherichia coli
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHFX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78364474, gi\|... - gi\|78486188\|ref\|YP_392113.1\| diaminopimelate decarboxylase [Thiomicrospira crunogena XCL-2], gi\|7836...	274.0	[0..4]	[387..6]
gi\|91227530, gi\|... - gi\|91227530\|ref\|ZP_01261867.1\| diaminopimelate decarboxylase [Vibrio alginolyticus 12G01], gi\|911885...	269.0	[0..5]	[387..4]
gi\|75855149, gi\|... - gi\|75855149\|ref\|ZP_00762809.1\| COG0019: Diaminopimelate decarboxylase [Vibrio sp. Ex25], gi\|25423010...	269.0	[0..5]	[387..4]
gi\|120323280, gi... - gi\|77951765\|ref\|ZP_00816184.1\| Diaminopimelate decarboxylase [Marinobacter aquaeolei VT8], gi\|778693...	268.0	[0..4]	[387..3]
gi\|110835189, gi... - gi\|110835189\|ref\|YP_694048.1\| diaminopimelate decarboxylase [Alcanivorax borkumensis SK2], gi\|110648...	267.0	[0..4]	[387..3]
gi\|28808010, gi\|... - gi\|28899758\|ref\|NP_799363.1\| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD 2210633], g... gi\|28808010 - gi\|28808010\|dbj\|BAC61247.1\| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD 2210633] gi\|149747846, gi... - gi\|153838760\|ref\|ZP_01991427.1\| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810], gi\|1...	267.0	[0..5]	[387..4]
gi\|24375791, gi\|... - gi\|24375791\|ref\|NP_719834.1\| diaminopimelate decarboxylase [Shewanella oneidensis MR-1], gi\|24350739... SO4309 - diaminopimelate decarboxylase	266.0	[0..4]	[387..3]
gi\|89074449, gi\|... - gi\|89074449\|ref\|ZP_01160926.1\| putative diaminopimelate decarboxylase [Photobacterium sp. SKA34], gi...	265.0	[0..7]	[387..7]
gi\|90581046, gi\|... - gi\|90581046\|ref\|ZP_01236846.1\| putative diaminopimelate decarboxylase [Vibrio angustum S14], gi\|9043...	265.0	[0..7]	[387..7]
gi\|88861274, gi\|... - gi\|88861274\|ref\|ZP_01135906.1\| putative diaminopimelate decarboxylase [Pseudoalteromonas tunicata D2...	264.0	[0..4]	[387..3]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVEALKRQN PALISAALSL WQQGKIAPDS WVIDVDQILE NGKRLIETAR LYGIELYLMT  60
   61 KQFGRNPWLA EKLLALGYSG IVAVDYKEAR VMRRAGLPVA HQGHLVQIPC HQVADAVEQG 120
  121 TDVITVFTLD KAREVSAAAV KAGRIQSVLL KVYSDDDFLY PGQESGFALK VLPEIVAEIQ 180
  181 NLPGLHLAGL THFPCLLWDE AVGKVLPTPN LHTLIQARDQ LAKSGIALEQ LNAPSATSCT 240
  241 SLPLLAQYGV THAEPGHALT GTIPANQQGD QPERIAMLWL SEISHHFRGD SYCYGGGYYR 300
  301 RGHAQHALVF TPENQKITET NLKTVDDSSI DYTLPLAGEF PVSSAVVLCF RTQIFVTRSD 360
  361 VVLVSGIHRG EPEIVGRYDS LGNSLGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.045757
Match:	2p3eA
Description:	No description for 2p3eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits