YRC Public Data Repository - Protein Structure Prediction

Protein:	YHFA_ECOLI
Organism:	Escherichia coli
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHFA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|200387904, gi... - gi\|200387904\|ref\|ZP_03214516.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Vir... lcl\|NC_016856.1_... - [gene=yhfA] [protein=hypothetical protein] [protein_id=YP_005239657.1] [location=complement(3628792.... gi\|205274690, gi... - gi\|205354909\|ref\|YP_002228710.1\| hypothetical protein SG3974 [Salmonella enterica subsp. enterica se... gi\|197095790, gi... - gi\|197364313\|ref\|YP_002143950.1\| hypothetical protein SSPA3109 [Salmonella enterica subsp. enterica ... gi\|198242114, gi... - gi\|198242114\|ref\|YP_002217426.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Du... gi\|194450894, gi... - gi\|194450894\|ref\|YP_002047488.1\| hypothetical protein SeHA_C3770 [Salmonella enterica subsp. enteric... gi\|197263035, gi... - gi\|197263035\|ref\|ZP_03163109.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Sai... gi\|56129640, gi\|... - gi\|56415383\|ref\|YP_152458.1\| hypothetical protein SPA3331 [Salmonella enterica subsp. enterica serov... gi\|167994565, gi... - gi\|205327576\|gb\|EDZ14340.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|62181969, gi\|... - gi\|62181969\|ref\|YP_218386.1\| hypothetical protein SC3399 [Salmonella enterica subsp. enterica serova... gi\|168260820, gi... - gi\|205350281\|gb\|EDZ36912.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Hadar s... gi\|238913588 - gi\|238913588\|ref\|ZP_04657425.1\| hypothetical protein SentesTe_20998 [Salmonella enterica subsp. ente... gi\|16422022, gi\|... - gi\|16766753\|ref\|NP_462368.1\| hypothetical protein STM3465 [Salmonella typhimurium LT2], gi\|16422022\|... gi\|206710509, gi... - gi\|207858706\|ref\|YP_002245357.1\| hypothetical protein SEN3292 [Salmonella enterica subsp. enterica s... gi\|224585259, gi... - gi\|224585259\|ref\|YP_002639058.1\| hypothetical protein SPC_3534 [Salmonella enterica subsp. enterica ...	142.0	[0..1]	[134..1]
gi\|71735354, gi\|... - gi\|71735354\|ref\|YP_272975.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. phaseolicola 1448A], ...	140.0	[0..1]	[133..63]
gi\|213418212 - gi\|213418212\|ref\|ZP_03351278.1\| hypothetical protein Salmonentericaenterica_10014 [Salmonella enteri... gi\|213052059 - gi\|213052059\|ref\|ZP_03344937.1\| hypothetical protein Salmoneentericaenterica_03407 [Salmonella enter... gi\|213857516 - gi\|213857516\|ref\|ZP_03384487.1\| hypothetical protein SentesT_20409 [Salmonella enterica subsp. enter... gi\|213649014 - gi\|213649014\|ref\|ZP_03379067.1\| hypothetical protein SentesTy_18073 [Salmonella enterica subsp. ente... gi\|213615727 - gi\|213615727\|ref\|ZP_03371553.1\| hypothetical protein SentesTyp_15119 [Salmonella enterica subsp. ent... gi\|213426763 - gi\|213426763\|ref\|ZP_03359513.1\| hypothetical protein SentesTyphi_14835 [Salmonella enterica subsp. e... gi\|16762819 - gi\|16762819\|ref\|NP_458436.1\| hypothetical protein STY4332 [Salmonella enterica subsp. enterica serov... gi\|16505125, gi\|... - gi\|25306899\|pir\|\|AH1002 conserved hypothetical protein yhfA [imported] - Salmonella enterica subsp. ... gi\|29144306, gi\|... - gi\|29144306\|ref\|NP_807648.1\| hypothetical protein t4040 [Salmonella enterica subsp. enterica serovar... gi\|214000202 - gi\|214000202\|ref\|ZP_03410937.1\| hypothetical protein Salmonellentericaenterica_05911 [Salmonella ent...	140.0	[0..1]	[134..1]
gi\|238788936, gi... - gi\|77975017\|ref\|ZP_00830554.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	140.0	[0..1]	[133..1]
gi\|77958267, gi\|... - gi\|77958267\|ref\|ZP_00822303.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|238797263, gi... - gi\|77962711\|ref\|ZP_00826528.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	139.0	[0..1]	[133..1]
gi\|152961142, gi... - gi\|77631154\|ref\|ZP_00793740.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|186897214, gi... - gi\|186897214\|ref\|YP_001874326.1\| hypothetical protein YPTS_3920 [Yersinia pseudotuberculosis PB1/+],...	139.0	[0..1]	[133..1]
gi\|157162833, gi... - gi\|75197289\|ref\|ZP_00707359.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	138.0	[0..1]	[134..1]
gi\|25306897 - pir\|\|AD0022 conserved hypothetical protein YPO0176 [imported] - Yersinia pestis (strain CO92) gi\|45440036, gi\|... - gi\|45440036\|ref\|NP_991575.1\| hypothetical protein YP_0175 [Yersinia pestis biovar Microtus str. 9100... gi\|149290181, gi... - gi\|150260773\|ref\|ZP_01917501.1\| hypothetical protein YPE_3091 [Yersinia pestis CA88-4125], gi\|149290... gi\|21960960, gi\|... - gi\|22127827\|ref\|NP_671250.1\| hypothetical protein y3957 [Yersinia pestis KIM], gi\|21960960\|gb\|AAM875... gi\|15978279, gi\|... - gi\|218927385\|ref\|YP_002345260.1\| hypothetical protein YPO0176 [Yersinia pestis CO92], gi\|16120517\|re... gi\|51598018, gi\|... - gi\|51598018\|ref\|YP_072209.1\| hypothetical protein YPTB3728 [Yersinia pseudotuberculosis IP 32953], g... gi\|167051197, gi... - gi\|167398693\|ref\|ZP_02304217.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166213228, gi... - gi\|166213228\|ref\|ZP_02239263.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167425715, gi... - gi\|167425715\|ref\|ZP_02317468.1\| OsmC family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167418830, gi... - gi\|167418830\|ref\|ZP_02310583.1\| OsmC family protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|108809287, gi... - gi\|108809287\|ref\|YP_653203.1\| hypothetical protein YPA_3296 [Yersinia pestis Antiqua], gi\|108781200\|... gi\|169749044, gi... - gi\|170022510\|ref\|YP_001719015.1\| hypothetical protein YPK_0249 [Yersinia pseudotuberculosis YPIII], ... gi\|165939997, gi... - gi\|89102999\|ref\|ZP_01175597.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|167468842 - gi\|167468842\|ref\|ZP_02333546.1\| hypothetical protein YpesF_13309 [Yersinia pestis FV-1] gi\|229904585, gi... - gi\|229904585\|ref\|ZP_04519696.1\| conserved protein [Yersinia pestis Nepal516], gi\|229678703\|gb\|EEO748... gi\|229836343, gi... - gi\|229836343\|ref\|ZP_04456510.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229706411\|gb\|EEO... gi\|229696399, gi... - gi\|229840033\|ref\|ZP_04460192.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229842115, gi... - gi\|229842115\|ref\|ZP_04462270.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165990675, gi... - gi\|166010585\|ref\|ZP_02231483.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165927883, gi... - gi\|165927883\|ref\|ZP_02223715.1\| OsmC family protein [Yersinia pestis biovar Orientalis str. F1991016... Q664P1\|Q664P1_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	138.0	[0..1]	[133..1]
gi\|92113042, gi\|... - gi\|92113042\|ref\|YP_572970.1\| OsmC-like protein [Chromohalobacter salexigens DSM 3043], gi\|91796132\|g...	137.0	[0..1]	[134..1]
gi\|193061888, gi... - gi\|75260353\|ref\|ZP_00731621.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|75211724, gi\|... - gi\|75211724\|ref\|ZP_00711788.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	137.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQARVKWVEG LTFLGESASG HQILMDGNSG DKAPSPMEMV LMAAGGCSAI DVVSILQKGR  60
   61 QDVVDCEVKL TSERREEAPR LFTHINLHFI VTGRDLKDAA VARAVDLSAE KYCSVALMLE 120
  121 KAVNITHSYE VVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1ml8A
Description:	Hypothetical protein in CRP region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0998435033416311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: