YRC Public Data Repository - Protein Structure Prediction

Protein:	YHDU_ECOLI
Organism:	Escherichia coli
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHDU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|224585185, gi... - gi\|224585185\|ref\|YP_002638984.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197364243, gi... - gi\|197364243\|ref\|YP_002143880.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|56129570, gi\|... - gi\|56415313\|ref\|YP_152388.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	85.0	[0..1]	[53..10]
gi\|213999655 - gi\|213999655\|ref\|ZP_03410390.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213853026 - gi\|213853026\|ref\|ZP_03382558.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213977837 - gi\|213977837\|ref\|ZP_03405096.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213619030 - gi\|213619030\|ref\|ZP_03372856.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213649889 - gi\|213649889\|ref\|ZP_03379942.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213428296 - gi\|213428296\|ref\|ZP_03361046.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213583204 - gi\|213583204\|ref\|ZP_03365030.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213162244 - gi\|213162244\|ref\|ZP_03347954.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213419983 - gi\|213419983\|ref\|ZP_03353049.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|206710438, gi... - gi\|207858635\|ref\|YP_002245286.1\| hypothetical protein SEN3221 [Salmonella enterica subsp. enterica s... gi\|213022998 - gi\|213022998\|ref\|ZP_03337445.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|204319977, gi... - gi\|204931210\|ref\|ZP_03222004.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|205354288, gi... - gi\|205354288\|ref\|YP_002228089.1\| hypothetical protein SG3278 [Salmonella enterica subsp. enterica se... gi\|197939477, gi... - gi\|198244961\|ref\|YP_002217357.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|238913533 - gi\|238913533\|ref\|ZP_04657370.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|199605330, gi... - gi\|200388232\|ref\|ZP_03214844.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yhdU] [protein=hypothetical protein] [protein_id=YP_005239577.1] [location=3571510..3571674] gi\|16766682, gi\|... - gi\|16766682\|ref\|NP_462297.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16421948\|... gi\|197251072, gi... - gi\|197251072\|ref\|YP_002148311.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197243980, gi... - gi\|197265725\|ref\|ZP_03165799.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194458454, gi... - gi\|194472090\|ref\|ZP_03078074.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194736867, gi... - gi\|194736867\|ref\|YP_002116335.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|194401401, gi... - gi\|194442738\|ref\|YP_002042643.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|194406343, gi... - gi\|194448039\|ref\|YP_002047415.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|168463375, gi... - gi\|195633469\|gb\|EDX51883.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205340886, gi... - gi\|205340886\|gb\|EDZ27650.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168245209, gi... - gi\|205336029\|gb\|EDZ22793.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168262588, gi... - gi\|205348504\|gb\|EDZ35135.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168233974, gi... - gi\|205332013\|gb\|EDZ18777.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168239416, gi... - gi\|197287882\|gb\|EDY27270.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205322538, gi... - gi\|205322538\|gb\|EDZ10377.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205328105, gi... - gi\|205328105\|gb\|EDZ14869.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161616412, gi... - gi\|161616412\|ref\|YP_001590377.1\| hypothetical protein SPAB_04221 [Salmonella enterica subsp. enteric...	84.0	[0..1]	[53..1]
gi\|62129528, gi\|... - gi\|62181895\|ref\|YP_218312.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	84.0	[0..1]	[53..10]
gi\|24114548, gi\|... - gi\|24114548\|ref\|NP_709058.1\| hypothetical protein SF3301 [Shigella flexneri 2a str. 301], gi\|2405374...	82.0	[0..1]	[59..10]
gi\|157159436, gi... - gi\|157159436\|ref\|YP_001464737.1\| hypothetical protein EcE24377A_3748 [Escherichia coli E24377A], gi\|... gi\|188491990, gi... - gi\|188491990\|ref\|ZP_02999260.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848718... gi\|226899019, gi... - gi\|237705979\|ref\|ZP_04536460.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|254038427, gi... - gi\|254038427\|ref\|ZP_04872485.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684005... gi\|91212694, gi\|... - gi\|91212694\|ref\|YP_542680.1\| hypothetical protein UTI89_C3705 [Escherichia coli UTI89], gi\|91074268\|... gi\|26249855, gi\|... - gi\|26249855\|ref\|NP_755895.1\| hypothetical protein c4029 [Escherichia coli CFT073], gi\|26110283\|gb\|AA... gi\|157162744, gi... - gi\|157162744\|ref\|YP_001460062.1\| hypothetical protein EcHS_A3456 [Escherichia coli HS], gi\|157068424...	81.0	[0..1]	[59..10]
gi\|218362595, gi... - gi\|218555827\|ref\|YP_002388740.1\| hypothetical protein ECIAI1_3406 [Escherichia coli IAI1], gi\|218362... gi\|81247045, gi\|... - gi\|82545634\|ref\|YP_409581.1\| hypothetical protein SBO_3257 [Shigella boydii Sb227], gi\|81247045\|gb\|A...	77.0	[0..1]	[59..1]
gi\|73857269, gi\|... - gi\|74313792\|ref\|YP_312211.1\| hypothetical protein SSON_3404 [Shigella sonnei Ss046], gi\|73857269\|gb\|...	75.0	[0..1]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKYWWLVV FAVFVFLFDT LLMQWIELLA TETDKCRNMN SVNPLKLVNC DELNFQDRM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits