YRC Public Data Repository - Protein Structure Prediction

Protein:	YHCO_ECOLI
Organism:	Escherichia coli
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHCO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83585390, gi\|... - gi\|83585390\|ref\|ZP_00924036.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli 101-1],... gi\|81242695, gi\|... - gi\|82778547\|ref\|YP_404896.1\| hypothetical protein SDY_3415 [Shigella dysenteriae Sd197], gi\|81242695... gi\|218706853, gi... - gi\|218706853\|ref\|YP_002414372.1\| putative barnase inhibitor [Escherichia coli UMN026], gi\|218433950\|... gi\|170518143, gi... - gi\|170680425\|ref\|YP_001745511.1\| hypothetical protein EcSMS35_3535 [Escherichia coli SMS-3-5], gi\|17... gi\|253771931, gi... - gi\|254289926\|ref\|YP_003055674.1\| predicted barnase inhibitor [Escherichia coli BL21(DE3)], gi\|253979... gi\|251786503, gi... - gi\|251786503\|ref\|YP_003000807.1\| hypothetical protein B21_03050 [Escherichia coli BL21], gi\|24237877... gi\|254163176, gi... - gi\|254163176\|ref\|YP_003046284.1\| predicted barnase inhibitor [Escherichia coli B str. REL606], gi\|25...	108.0	[0..1]	[90..1]
gi\|213646653 - gi\|213646653\|ref\|ZP_03376706.1\| hypothetical protein SentesTy_04600 [Salmonella enterica subsp. ente... gi\|213857725 - gi\|213857725\|ref\|ZP_03384696.1\| hypothetical protein SentesT_21580 [Salmonella enterica subsp. enter... gi\|214000994 - gi\|214000994\|ref\|ZP_03411729.1\| hypothetical protein Salmonellentericaenterica_10720 [Salmonella ent... gi\|62181871, gi\|... - gi\|62181871\|ref\|YP_218288.1\| hypothetical protein SC3301 [Salmonella enterica subsp. enterica serova... gi\|168245040, gi... - gi\|205336171\|gb\|EDZ22935.1\| barstar [Salmonella enterica subsp. enterica serovar Heidelberg str. SL4... gi\|56415290, gi\|... - gi\|56415290\|ref\|YP_152365.1\| hypothetical protein SPA3230 [Salmonella enterica subsp. enterica serov... gi\|168262616, gi... - gi\|205348583\|gb\|EDZ35214.1\| barstar [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P06... gi\|168822741, gi... - gi\|205340905\|gb\|EDZ27669.1\| barstar [Salmonella enterica subsp. enterica serovar Weltevreden str. HI... gi\|194446672, gi... - gi\|194446672\|ref\|YP_002042618.1\| barstar [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161616382, gi... - gi\|161616382\|ref\|YP_001590347.1\| hypothetical protein SPAB_04191 [Salmonella enterica subsp. enteric... gi\|205328119, gi... - gi\|205328119\|gb\|EDZ14883.1\| barstar [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. C... gi\|168233946, gi... - gi\|205332032\|gb\|EDZ18796.1\| barstar [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 1... gi\|197287889, gi... - gi\|197287889\|gb\|EDY27277.1\| barstar [Salmonella enterica subsp. enterica serovar Schwarzengrund str.... gi\|213052255 - gi\|213052255\|ref\|ZP_03345133.1\| hypothetical protein Salmoneentericaenterica_04552 [Salmonella enter... gi\|213425844 - gi\|213425844\|ref\|ZP_03358594.1\| hypothetical protein SentesTyphi_09429 [Salmonella enterica subsp. e... gi\|213583118 - gi\|213583118\|ref\|ZP_03364944.1\| hypothetical protein SentesTyph_18688 [Salmonella enterica subsp. en... gi\|213618916 - gi\|213618916\|ref\|ZP_03372742.1\| hypothetical protein SentesTyp_21605 [Salmonella enterica subsp. ent... gi\|204319899, gi... - gi\|204931132\|ref\|ZP_03221926.1\| barstar [Salmonella enterica subsp. enterica serovar Javiana str. GA... gi\|205274045, gi... - gi\|205354264\|ref\|YP_002228065.1\| hypothetical protein SG3253 [Salmonella enterica subsp. enterica se... gi\|207858611, gi... - gi\|207858611\|ref\|YP_002245262.1\| hypothetical protein SEN3196 [Salmonella enterica subsp. enterica s... gi\|238913556 - gi\|238913556\|ref\|ZP_04657393.1\| hypothetical protein SentesTe_20838 [Salmonella enterica subsp. ente... gi\|213022798 - gi\|213022798\|ref\|ZP_03337245.1\| hypothetical protein Salmonelentericaenterica_09323 [Salmonella ente... lcl\|NC_016856.1_... - [gene=yhcO] [protein=putative cytoplasmic protein] [protein_id=YP_005239549.1] [location=complement(... gi\|16421923, gi\|... - gi\|16766658\|ref\|NP_462273.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421923\|... gi\|197241140, gi... - gi\|197262885\|ref\|ZP_03162959.1\| barstar [Salmonella enterica subsp. enterica serovar Saintpaul str. ... gi\|29139246, gi\|... - gi\|29143611\|ref\|NP_806953.1\| hypothetical protein t3278 [Salmonella enterica subsp. enterica serovar... gi\|197364220, gi... - gi\|197364220\|ref\|YP_002143857.1\| hypothetical protein SSPA3016 [Salmonella enterica subsp. enterica ... gi\|198243604, gi... - gi\|198243604\|ref\|YP_002217332.1\| barstar [Salmonella enterica subsp. enterica serovar Dublin str. CT... gi\|25513222, gi\|... - gi\|25513222\|pir\|\|AH0910 conserved hypothetical protein STY3544 [imported] - Salmonella enterica subs... gi\|200386791, gi... - gi\|200386791\|ref\|ZP_03213403.1\| barstar [Salmonella enterica subsp. enterica serovar Virchow str. SL... gi\|194450085, gi... - gi\|194450085\|ref\|YP_002047391.1\| barstar [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|194469260, gi... - gi\|194469260\|ref\|ZP_03075244.1\| barstar [Salmonella enterica subsp. enterica serovar Kentucky str. C... gi\|16762122 - gi\|16762122\|ref\|NP_457739.1\| hypothetical protein STY3544 [Salmonella enterica subsp. enterica serov... gi\|194737005, gi... - gi\|194737005\|ref\|YP_002116311.1\| barstar [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|197250714, gi... - gi\|197250714\|ref\|YP_002148287.1\| barstar [Salmonella enterica subsp. enterica serovar Agona str. SL4...	107.0	[0..1]	[90..1]
gi\|110807101, gi... - gi\|110807101\|ref\|YP_690621.1\| hypothetical protein SFV_3266 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114526, gi\|... - gi\|24114526\|ref\|NP_709036.1\| hypothetical protein SF3279 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30064571, gi\|... - gi\|30064571\|ref\|NP_838742.1\| hypothetical protein S3494 [Shigella flexneri 2a str. 2457T], gi\|300428...	105.0	[0..1]	[90..1]
gi\|85544468, gi\|... - gi\|85544468\|pdb\|2CX6\|B Chain B, Crystal Structure Of Ribonuclease Inhibitor Barstar, gi\|85544467\|pdb... gi\|85544467\|pdb\|... - Chain A, Crystal Structure Of Ribonuclease Inhibitor Barstar, Chain B, Crystal Structure Of Ribonucl...	102.0	[0..2]	[90..2]
gi\|15023737, gi\|... - gi\|15894131\|ref\|NP_347480.1\| barstar-like protein ribonuclease (barnase) inhibitor [Clostridium acet... gi\|25294080 - pir\|\|A97004 barstar-like protein ribonuclease (barnase) inhibitor [imported] - Clostridium acetobuty...	96.0	[0..1]	[89..1]
gi\|20148764 - gi\|20148764\|gb\|AAM10782.1\| barstar [yeast mitochondrial synthetic construct] BARS_BACAM - Barstar OS=Bacillus amyloliquefaciens PE=1 SV=3 gi\|30014062 - gi\|30014062\|gb\|AAO92245.1\| barnase inhibitor [Cloning vector pHR28A10] gi\|30984053, gi\|... - gi\|30984055\|gb\|AAP41140.1\| barnase inhibitor [Cloning vector pHRBar-6], gi\|30984053\|gb\|AAP41138.1\| b...	92.0	[0..1]	[79..1]
gi\|82746447, gi\|... - gi\|82746447\|ref\|ZP_00908953.1\| barstar-like protein ribonuclease (barnase) inhibitor [Clostridium be...	91.0	[0..1]	[88..1]
gi\|52787403, gi\|... - gi\|52787403\|ref\|YP_093232.1\| YrdF [Bacillus licheniformis ATCC 14580], gi\|52349905\|gb\|AAU42539.1\| Yr...	91.0	[0..1]	[82..1]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIYTFDFDE IESQEDFYRD FSQTFGLAKD KVRDLDSLWD VLMNDVLPLP LEIEFVHLGE  60
   61 KTRRRFGALI LLFDEAEEEL EGHLRFNVRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	2cx6A
Description:	Crystal structure of ribonuclease inhibitor Barstar
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits